Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1377 ATGTGCTCCTGCATCTTAACCATTCTTTCTTCCATAGTTCTTGTTTCAGTCATCATGACAGTCACTATGTCAGAATCAGGAGATTCTGAGCTTCAGTCTTCAGTTTTGCAGGAGGATTTGGATGATCTGAGCTTCGATCTTCATTCTGCAGCTGAATTTGATGAGGATCTGAGCCTTGTTCTTCATTCTGCGTCGGGATTTGAAGATGATCAGAGCCTTGTTCTTCAGGTTTTGGAAAACAATCAGCTTGGAGGAAATCTTCCTGACAGCCTTGGCAAATTGAGCCGCTTGCAAAGACTTAGGATAGATGGAAATGATGTATCAGGAAAGCTACCTGAATTTATTGGCAACTGGACCAAACTTCAGAGACTGGATATTCAAGGAACTTCTATGGAGACCCCTATTTCTCGTGCCATATCGTTGTTGAAAAACTTAACCCAACTGAGGATAACCGATTTGAAGGGACTGCCAACAAGTTTTCCTAATTTGACTCTATTGACATCTTTACAAGAATTGACCCTAAGAAATTGCTTAATCGAGGATCGTATTCCTAAATATGTTGGACAGTTTAATGTATTAAAAACTTTAGATCTAAGCTTCAACCGATTGAGCAGACAAATTCCAGAGACGTTCAAGAATTTGTTGACCCAAAGAACTAAGTTCATGTTTCTGGCTAACAACTTGTTAAGTGGCCGACTACCGAACTGGATTACCAATAGCTCAAGGAACATAGATTTATCTTACAATAATTTTACTGGGTCGCTTGTTCCCAATTGTCATCGCTCTGATGTGAACTTGGTTTCAAGTTATTCAACCACCATGAATGAAACTGTTGATTGGTGTCTGAGGAAGGGTCTCCCTTGCCCAAGAGAAGTTCGATTTCACTCACTGTTCATTAACTGTGGAGGAAAGAGCATGAAGTTCGATGGCAATGAATACGAAAGCGATACGGCAACAAATGGTCGAAATTTCAGTTCGTTTGATTTTTCAAACGAAAGATGGGGTTACAGCAGCACTGGTATTTTCTCTGGAAATGATAGCCATCCTTACACAGTTACAAACACCAATGTGTCAGCTTTAGGCGTCTATGAGACCGCTCGACTTGCTCCTGTTTCGCTCAAGTACTATGGATTCTGCTTGCGGAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAGATTATGTTTACTGCTGACCAAACCTTTGGCAGTCTGGGAAAGCGCATATTCGATATCTCAATTCAAGGAAACTTGGTACAAAAAGATTTCAACATAATGGAAAAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATGTTTTAGTGAATGGAAGCACTCTTGAGATCCACTTATATTGGGCTGGTAAAGGAACAAATGTTCTTCCTCTAAGAGGAGTGTACGGACCTCTAATATCTGCAATTACAGTCACACCCAACTTTAATGTGGAATCTAATGTGAAAACTAGAGGGCTATCAATGAGAGCTGTTGCTGGCATTATTGTGTTAGAAAATTGTGGAAGACAAGGAGTATTATTGGATGAAACTTCAATTGCCGTGAAGCAGCTATCCTCTAAATCAAGGCAAGGGAATCGTGAATTCATCACTGAAATTGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAGATCAGTTATTGTTTACATATGAGCATCTAGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAGCGATTTAGATATATATACTTTCTTCGTAACTTCTTTTAG 1788 39.65 MCSCILTILSSIVLVSVIMTVTMSESGDSELQSSVLQEDLDDLSFDLHSAAEFDEDLSLVLHSASGFEDDQSLVLQVLENNQLGGNLPDSLGKLSRLQRLRIDGNDVSGKLPEFIGNWTKLQRLDIQGTSMETPISRAISLLKNLTQLRITDLKGLPTSFPNLTLLTSLQELTLRNCLIEDRIPKYVGQFNVLKTLDLSFNRLSRQIPETFKNLLTQRTKFMFLANNLLSGRLPNWITNSSRNIDLSYNNFTGSLVPNCHRSDVNLVSSYSTTMNETVDWCLRKGLPCPREVRFHSLFINCGGKSMKFDGNEYESDTATNGRNFSSFDFSNERWGYSSTGIFSGNDSHPYTVTNTNVSALGVYETARLAPVSLKYYGFCLRSGSYNVKLHFAEIMFTADQTFGSLGKRIFDISIQGNLVQKDFNIMEKAGGVGKSFILEEPNVLVNGSTLEIHLYWAGKGTNVLPLRGVYGPLISAITVTPNFNVESNVKTRGLSMRAVAGIIVLENCGRQGVLLDETSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGDQLLFTYEHLENNSLARALFGKRFRYIYFLRNFF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38655007 38667631 - Maker00016243 Lcy9g1377 642493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1377 595 SUPERFAMILY Protein kinase-like (PK-like) 515 586 IPR011009 -
Lcy9g1377 595 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 74 501 IPR051824 -
Lcy9g1377 595 Gene3D Ribonuclease Inhibitor 49 270 IPR032675 -
Lcy9g1377 595 Pfam Protein tyrosine and serine/threonine kinase 516 580 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1377 595 SUPERFAMILY L domain-like 77 257 - -
Lcy9g1377 595 Gene3D Phosphorylase Kinase; domain 1 479 570 - -
Lcy9g1377 595 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 294 482 - -
Lcy9g1377 595 Pfam Malectin domain 297 477 IPR021720 -
Lcy9g1377 595 ProSiteProfiles Protein kinase domain profile. 459 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1377 595 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Lcy9g1377 595 Gene3D - 295 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1377 Lcy-Chr9:38655007 Lcy9g1380 Lcy-Chr9:38709991 7.80E-200 dispersed
Lcy9g1377 Lcy-Chr9:38655007 Lcy9g1379 Lcy-Chr9:38682722 2.01E-167 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66192 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1377 - - - 0.0