Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1379 ATGTCAATTTACCGCGGAGCTAAGCTCGCTTTGGCGGCAGTTGAGAATTCGAACATGGATTTGAAGAGGGTTCATGTTCATGTTCATGTTCGTGTTCGTGTTCGTGTTCGTGTTCGTGTTCGTGTTCTTGTCTGTGGATTGCTGCTTTTCAACTGCTTCTTGGAATTTGGATCGGATGCTCAAATTCTGCCTGAACAAGAAGTGAGAGCCCTTGAAGCAATATCTGCAGAGCTAAAGAATTTAAATTGGAAGGTCCACCAGAATTCTTGCATTAATGGCGACGGCTTTTTCAATAGAATTAGCAGGAATGCCAATATGAGAGAGAGATCTCTCTCGCAATTTAATAAATGGATCAATCCCAAAGGAGTTTGCTCGCATTCCTCTTGTTATTTTGTAAGTTGTTATTTTCTGTTTTACATAATTAATAGGTTTGATGTTCAATCTAGATGTATAGAGTTCGATCACCAGTGTGATTGTCAAATTCTTATGTGCAGTTCCATGGTGGAAAACCAACTCAGTGGTCAAATTCCTCCAGAACTTGGTGATATTGCTTCACTTGAGGAACTGATCTTGGAAAGCAATCAGCTTGGAGGAAATCTTCCTGATAGCCTCGGCAAACTTAGCCACCTGCGAAGACTGCTTCTTTCTTCAAATAATTTCATAGGGTCCATTCCAGAATCTTTTGGAAACTTGAGGAACTTGACTGAATTTCGGATTGATGGAACTAACATATCAGGAAAGATACCTGAATATATTGGCAACTGGACCAAACTTGGTAAACTGTATGTTCAAGGAACTTCCATGGAGAACCCCATTCCTCGTGCCATATCTGAGTTGAAAAACTTAACCGAACTGATAATGAGTGATTTGAAGGGACCGCGGATAAATTTCCCCAATTTGACTCAATTAACATCTGTGCAAACATTGGTCTTAAGAAACTGCTTAATCGAGGGTCCTATCCCTGAATATATTGGACAGTTTAGTGAGTTAATAACGTTAGATCTAAGCTTCAACAGATTAAGTGGCCCAATTCCAGAGACAGTTTGGAATCTGTTGGTCAACAAAACTGAGTTCATGTTTTTGACTAACAACTCCTTGACCGGCCAAGTACCGGGTTGGATTATGAACGGTGGCAACAGCCAAAGGAACATTGATGCTTGGTGCCTGAAGAAGGATCTCCCTTGCCCTACAGAAGCTCGATTTGATTCGTTGTTCATTAATTGTGGAGGACGAGGTATGGAGGTTAATGGTAATAAATACGAAGGGGATGATACTCAGAGTGGCAGAGCCAGTTTCTATTCTTCATCAGAAAGATGGGGTTATAGTAGCACTGGTGTTTTCCTGAAAAGTCATCGCGTTCCTTACATAGTATCAACGAGCAATGGCTCTGCTTCAGGCGTCTATGCCACTGCTCGACTCTCACTTCTTTCTCTCAAGTATTATGGATTTTGCTTGAGAAATGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTGGGTTTACTGCTGACCAAACCCGTACTAGGAAACGTATATTTGATGTCTCAATTCAAGGAGACTTGGTTTGGAAAGATTTTAACATAGTGGAGGAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATGTTTTAGTGAATGGAAGTACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGGACAAAGATAGGGGTGTATGGACCTCTAATATCTGCAATCACTGTGACACCAAACTTTAATGTGGAAACTAATGTGGAAAATAGAGGGCTATCGGCTGGAGCTATAGCTGGCATTGTTGTTGGTATTTTCGTGTTCGTTGTTTTAGTATTGGTTGTTCTTCGATGGAAGGGTTACTTGGGTGGAAAGGAAACCGAAACCGATGAACTTCGGGATCTGAAATTACAGACAGGTTATTTCAGTTTAAGACAAATTAAAGCAGCGACTAACAACTTTGACTTGGCAAATAAGATAGGCGAAGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTCTCGGATGGCACTTCAATTGCTGTAAAACAGCTATCTTCTAAATCAAGGCAAGGGAACCGTGAATTCATCACCGAAATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCCCGTGCCCTATTTAGTCCCGAGAAGCACTCACTACATTTGGACTGGCCAATAAGAATGAATATATGCTTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCTACTAACGTGCTACTCGATGGAAACTTGAATGCCAAGATCTCAGATTTTGGGTTGGCTAAGCTTGATGACGAGGAGAACACCCATATCATCACAAGAATTGCAGGCACAATCGGTTACATGGCTCCCGAATATGCAGTGAAGGGTTATTTGACTGACAAAGCTGATGTTTATAGCTTTGGAGTTGTGGGGTTTGAAATTGTCAGTGGAAAAAGTAACACAAACTATATGCCGAACGACGAGTTTGATTATCTTCCTGATTGGGCTTGTGTTCTACATGAGGAAGGGAACCTACTAGAACTCGTTGATTCGAGTCTTGGTCCACATTACTCAAAAGAGGAGGTCATGAGGATGCTTCATATAGCTCTCTTGTGCACAAATCTGTCTCCAAGTCTCAGACCTTCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCGAAGTCGATGTATCGAACATCAAGCGCAACCCGCCGGATCGAGATGCAAGGCTCAAAGCCTTTGAAAAGTTGTCACAAGATAGCCCAACAAGTATTTCAACATCGTCACAAGGCATTCCAATGCAGAGAAGCATGTTAATGGACGGGATGTGGATTGATTCATCATCTACTTCTAGCCAAAACAAGAATAAGACTCAAGTGGATTTTTCAACTAGCAGTCTCCTTAGAGATTGA 3021 41.11 MSIYRGAKLALAAVENSNMDLKRVHVHVHVRVRVRVRVRVRVLVCGLLLFNCFLEFGSDAQILPEQEVRALEAISAELKNLNWKVHQNSCINGDGFFNRISRNANMRERSLSQFNKWINPKGVCSHSSCYFVSCYFLFYIINRFDVQSRCIEFDHQCDCQILMCSSMVENQLSGQIPPELGDIASLEELILESNQLGGNLPDSLGKLSHLRRLLLSSNNFIGSIPESFGNLRNLTEFRIDGTNISGKIPEYIGNWTKLGKLYVQGTSMENPIPRAISELKNLTELIMSDLKGPRINFPNLTQLTSVQTLVLRNCLIEGPIPEYIGQFSELITLDLSFNRLSGPIPETVWNLLVNKTEFMFLTNNSLTGQVPGWIMNGGNSQRNIDAWCLKKDLPCPTEARFDSLFINCGGRGMEVNGNKYEGDDTQSGRASFYSSSERWGYSSTGVFLKSHRVPYIVSTSNGSASGVYATARLSLLSLKYYGFCLRNGSYNVKLHFAEIGFTADQTRTRKRIFDVSIQGDLVWKDFNIVEEAGGVGKSFILEEPNVLVNGSTLEIHLYWAGKGTKIGVYGPLISAITVTPNFNVETNVENRGLSAGAIAGIVVGIFVFVVLVLVVLRWKGYLGGKETETDELRDLKLQTGYFSLRQIKAATNNFDLANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFSPEKHSLHLDWPIRMNICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDDEENTHIITRIAGTIGYMAPEYAVKGYLTDKADVYSFGVVGFEIVSGKSNTNYMPNDEFDYLPDWACVLHEEGNLLELVDSSLGPHYSKEEVMRMLHIALLCTNLSPSLRPSMSSVVSMLEGKIEVDVSNIKRNPPDRDARLKAFEKLSQDSPTSISTSSQGIPMQRSMLMDGMWIDSSSTSSQNKNKTQVDFSTSSLLRD 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38682722 38694183 - Maker00016131 Lcy9g1379 642495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1379 1006 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
Lcy9g1379 1006 Pfam Leucine Rich Repeat 330 351 IPR001611 GO:0005515(InterPro)
Lcy9g1379 1006 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515(InterPro)
Lcy9g1379 1006 Gene3D Ribonuclease Inhibitor 156 292 IPR032675 -
Lcy9g1379 1006 Gene3D Ribonuclease Inhibitor 294 383 IPR032675 -
Lcy9g1379 1006 Pfam Malectin domain 404 576 IPR021720 -
Lcy9g1379 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 115 942 IPR051824 -
Lcy9g1379 1006 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 623 729 - -
Lcy9g1379 1006 SUPERFAMILY L domain-like 166 373 - -
Lcy9g1379 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1379 1006 SMART serkin_6 654 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1379 1006 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 581 - -
Lcy9g1379 1006 Pfam Protein tyrosine and serine/threonine kinase 656 924 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1379 1006 SUPERFAMILY Protein kinase-like (PK-like) 638 926 IPR011009 -
Lcy9g1379 1006 MobiDBLite consensus disorder prediction 981 1006 - -
Lcy9g1379 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 201 292 - -
Lcy9g1379 1006 Gene3D Phosphorylase Kinase; domain 1 623 729 - -
Lcy9g1379 1006 Gene3D - 403 581 - -
Lcy9g1379 1006 Gene3D Transferase(Phosphotransferase) domain 1 730 944 - -
Lcy9g1379 1006 ProSiteProfiles Protein kinase domain profile. 654 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1379 1006 CDD STKc_IRAK 660 927 - -
Lcy9g1379 1006 FunFam Putative LRR receptor-like serine/threonine-protein kinase 730 937 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1379 Lcy-Chr9:38682722 Lcy9g1396 Lcy-Chr9:38975458 6.20E-209 dispersed
Lcy9g1377 Lcy-Chr9:38655007 Lcy9g1379 Lcy-Chr9:38682722 2.01E-167 proximal
Lcy9g1379 Lcy-Chr9:38682722 Lcy9g1380 Lcy-Chr9:38709991 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66193 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1379 - - - 0.0