Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1380 ATGGTCGGAACTTGGGACATGGATTTTCCTGTTTGGAAATTTTTGAAGAGTGTTCGTGTTCTTCTTTTTGGGTTTCTGGTTTTGAACTGCTTCGTCAGATTTGGATCGGACTCACAACCTCTGCCTGAACAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAACGTGCACCAAAATTCTTGCATTAATGGCGATGGATTTTCCAATGGACCTATCGTTAATACAGATATTATCAGAGAGGTGAACTGCACTTGCACGACTGCAGTTTGCACAGTCACTAGCATTCGGCTAAAGGGTCTCAATCTAACTGGAACTCTGCCAGCAGCATTTTCAAATCTGACTCGGCTGCAACTGATAGATCTTACTCGCAATTTAATAACCGGATCAATCCCTAGAGAGTTTGCTCGGATTCCTCTTGTTGACTTGTCCATGTTGGGAAATCGGCTCAGTGGACAGATTCCTCCAGAGATTGGTGACATTGCTACACTCGAGCATCTGGTCTTGGAAGACAATCTTCTTGGAGGAAACCTTCCCGAAAGCCTCGGGAGATTGAGCCGCTTGCAAAGATTACTTCTCAGTGCAAATAATTTCACGGGGACGATTCCGGCCTCGTATGGAAACTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATGATATATCAGGAAAACTTCCGGAGTTCATTGGCAATTGGACCAAACTTGATAGACTGGACATTCAAGGTACTTCAATGGAGAACCCGATTCCTCGTGCCATATCCGAGTTGAAAAACTTAACTGAATTGAGGATTACTGATTTGAAGGGACGAGCAACAAGTTTTCCCAATTTGACTCTATTGACATCTTTAGAAGAATTGGTCCTAAGAAATTGCTTAATCGAGGATCGTATTCCTGAATATATTGGACAGTTTAGTAGATTAAAAACTTTAGATCTAAGCTTCAACGAATTGAATGGTCCTATTCCAGACTCATTTCGGAATCTAGAAAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTCAAAGGAGCATAGATTTATCTTACAACAATTTTACTGGGTCCCCTGTTTCAAGTTGTCAACAATCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAACGAAACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGCCCTATAGGAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGCATGATGGTAATCAATATGAAGAGGATGTCACTCTAGGTGGCAAGTCCAATTTCCTTTCTTTCTCAGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAAAAGAGGATGCTGATTACAGAGCAACAAGTAGCAATGCGTCTATTCCGAGCATCTATCGAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTAAGAAGAGGAAGCTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTGCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCACAATTCAAGGAAATTTGGTTAGAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTGTAGGTAACACCTTTACTTTGGAAGAGCCTAATATTTTGGTCAATGAAAGTACTCTTGAGATTCACTTGTATTGGGCTGGCAAAGGAACTACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTGATATCTGGGATCACTGTGACACCAAACTTTGATGTGGAGACTGGAGGGCTGTCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTTGTTTTGTGTTTATTGTGTTGGTATTGGCTGTTCTTAGATGGAAAGGTTACTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGGCCTAGATTTACAGACGGGTTATTTCAGTTTGAGACAAATTAAAGCAGCCACCAACAACTTCGACTCGACAAATAAGATCGGCGAAGGAGGTTTTGGTCCAGTCTTCAAGGGAGTATTATCAGATGGTACTCCAATTGCAGTAAAGCAACTATCATCTAAATCAAGACAAGGGAATCGCGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATCGAAGGAAACCAATTACTGCTTATATATGAGTTTCTAGAGAACAATAGTCTTGCCCGTGCACTTTTTGGCGCTGAGGAGCACCGACTACATTTGGATTGGCCGATAAGAATGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCCGTATTGAAAATTGTTCACAGAGATATAAAAGCTACCAATGTGCTACTTGATAAAAATCTGAATGCCAAGATTTCCGACTTTGGGTTGGCCAGGCTTGATGAGGAGGAGAATACCCATATCAGCACAAGAATTGCTGGCACAATAGGTTACATGGCTCCGGAGTATGCAATGAGAGGTTACTTAACTGATAAAGCTGATGTTTATAGCTTCGGAGTTGTGGCCTTAGAGATTGTTAGTGGAAAAAGTAACACAAATTACAGGCCAAAGGAGGAATTTGTCTATCTTCTTGACTGGGCTTACGTTCTACAAGAGCAAGGAAACCTTCTCGAACTTGTCGATCCGAGTCTCGACTCACATTACTCAAAAGAAGAGGTCATGAGGATGATTCATATCTCTCTCTTATGCACAAATCCATCTCCAACTCTCAGGCCATCCATGTCTTCCGTGGTTAGCATGCTAGAAGGAAAAATCGCGGTCCAAGCACCGATCATCAAGCGCGGTGCTGGTGCAGTCGATCAAGATGCAAGGTTCAAAGCCTTTGAAAGGCTGTCACAAGATAGCATAACAAGCATTTCGACATCATCGCAAGGCATTCCAATGCAGAAAAGCATGTTAATGGATGGGCCATGGATTGACTCCTCTACTTCTACACAAAACAAGGACGAGACACGAGATTTTTCTTCAACAAGAAACCTCCTTTAG 3063 42.08 MVGTWDMDFPVWKFLKSVRVLLFGFLVLNCFVRFGSDSQPLPEQEVRALQAISAELRNLNWNVHQNSCINGDGFSNGPIVNTDIIREVNCTCTTAVCTVTSIRLKGLNLTGTLPAAFSNLTRLQLIDLTRNLITGSIPREFARIPLVDLSMLGNRLSGQIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFTGTIPASYGNLRNLTDFRIDGNDISGKLPEFIGNWTKLDRLDIQGTSMENPIPRAISELKNLTELRITDLKGRATSFPNLTLLTSLEELVLRNCLIEDRIPEYIGQFSRLKTLDLSFNELNGPIPDSFRNLERVTQFLFLTNNSLSGQVPSWILNSQRSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNETVAWCLRKDLPCPIGTRFHSLFINCGGQRMEHDGNQYEEDVTLGGKSNFLSFSDRWAYSSTGVFLGKEDADYRATSSNASIPSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDITIQGNLVRKDFNIMEEAGGVGNTFTLEEPNILVNESTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVETGGLSAGAIAGIVVGCFVFIVLVLAVLRWKGYLGGKDTEDSELKGLDLQTGYFSLRQIKAATNNFDSTNKIGEGGFGPVFKGVLSDGTPIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEFLENNSLARALFGAEEHRLHLDWPIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLDSHYSKEEVMRMIHISLLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRGAGAVDQDARFKAFERLSQDSITSISTSSQGIPMQKSMLMDGPWIDSSTSTQNKDETRDFSSTRNLL 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38709991 38718831 - Maker00017032 Lcy9g1380 642496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1380 1020 SMART serkin_6 669 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1380 1020 Pfam Leucine Rich Repeat 313 335 IPR001611 GO:0005515(InterPro)
Lcy9g1380 1020 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515(InterPro)
Lcy9g1380 1020 Pfam Protein tyrosine and serine/threonine kinase 672 939 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1380 1020 Gene3D Ribonuclease Inhibitor 81 273 IPR032675 -
Lcy9g1380 1020 MobiDBLite consensus disorder prediction 995 1020 - -
Lcy9g1380 1020 Gene3D Phosphorylase Kinase; domain 1 639 744 - -
Lcy9g1380 1020 SUPERFAMILY Protein kinase-like (PK-like) 652 944 IPR011009 -
Lcy9g1380 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 967 IPR051824 -
Lcy9g1380 1020 Gene3D Ribonuclease Inhibitor 274 399 IPR032675 -
Lcy9g1380 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 952 - -
Lcy9g1380 1020 SUPERFAMILY L domain-like 85 334 - -
Lcy9g1380 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1380 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 208 275 - -
Lcy9g1380 1020 Gene3D Transferase(Phosphotransferase) domain 1 745 951 - -
Lcy9g1380 1020 CDD STKc_IRAK 675 942 - -
Lcy9g1380 1020 Pfam Malectin domain 417 595 IPR021720 -
Lcy9g1380 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 600 - -
Lcy9g1380 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
Lcy9g1380 1020 ProSiteProfiles Protein kinase domain profile. 669 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1380 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 282 374 - -
Lcy9g1380 1020 MobiDBLite consensus disorder prediction 991 1020 - -
Lcy9g1380 1020 Gene3D - 415 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1238 Lcy-Chr13:29205025 Lcy9g1380 Lcy-Chr9:38709991 8.32E-29 dispersed
Lcy4g0067 Lcy-Chr4:1020220 Lcy9g1380 Lcy-Chr9:38709991 2.10E-138 dispersed
Lcy5g1798 Lcy-Chr5:40718351 Lcy9g1380 Lcy-Chr9:38709991 1.03E-223 dispersed
Lcy6g0645 Lcy-Chr6:6125235 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy6g0701 Lcy-Chr6:6834561 Lcy9g1380 Lcy-Chr9:38709991 8.45E-105 dispersed
Lcy9g1373 Lcy-Chr9:38561558 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1374 Lcy-Chr9:38589392 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1375 Lcy-Chr9:38622455 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1376 Lcy-Chr9:38653960 Lcy9g1380 Lcy-Chr9:38709991 6.22E-107 dispersed
Lcy9g1377 Lcy-Chr9:38655007 Lcy9g1380 Lcy-Chr9:38709991 7.80E-200 dispersed
Lcy9g1380 Lcy-Chr9:38709991 Lcy9g1384 Lcy-Chr9:38787834 8.97E-250 dispersed
Lcy9g1379 Lcy-Chr9:38682722 Lcy9g1380 Lcy-Chr9:38709991 0 tandem
Lcy9g1380 Lcy-Chr9:38709991 Lcy9g1381 Lcy-Chr9:38736514 1.54E-244 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66194 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1380 - - - 0.0