Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1381 ATGTTGTTGGCTCGATTTCTCACCGTCGTTTTTCTGATATCTCTCTGCTTCATAAGCCTCGCTTCCGGCGCCACTCGGCTGCCGGACGACGAAGTTGAGGCGTTGAGGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCCGATCCATGCGGCGGTTTGAGTAGCGGTTGGATATCGAGTTCTGCACAGTTCGACCCGAGTTTTTCTAATAACGTCACCTGCAACTGCACGTTTCAGAACAATACAGTCTGTCACGTCACTAACATTCTTCTAAAGGCGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATAGTGAGGTTGCCTTTCCTGCAGGAACTTTCTCTTCTTGGAAATCGATTGACGGGCCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGGTCCTAGAAATGAATCATTTATCTGGAAGTGTACCTCCGGAACTTGGAAATTTGACCAGCTTATCAAGATTGCTTCTAACCTCAAACAACTTTTCTGGGGAGCTCCCACCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGTGATAATCATTTCACAGGGCCAATCCCTACATTTATTCAGAATTGGACGAATCTTGGAAAAGTGGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAACATTAACTGATGTGAGAATCAGTGACTTAACTGGAAGTTCATCACCCTTTCCACCCCTTAATACTTTGACAAAATTGAAAGTCCTGATATTGAGGAATTGCAATATAACAGGGGAGTTGCCCAAAAATCTTGATGCGTTGACAGCATTGAAAACCTTAGACTTTAGCTTCAACAAAATTACTGGACAAATACCTGCCAGCTTTGAAGCTTTGAAAAAAGTGGATAGCATATATTTAGCTGGAAACATGATAAATGGATCAGTGCCCACTTGGATGCTACAGCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTCAGAGAAATGGTCAGAACAATGGTTGTCAAACACGAAATTTAAACCTGTTTGCAAGCTCTTCACAGGACAATAATAATTCCAGTGGAACAGTTTCATGTTTAGCAAACACTTGCGGAAAAACTTCATACTCTCTCCATATCAACTGCGGTGGAAAGGAAGAATTAATTAATGGAACAACCAAATTTGATGGAGACACAAACACTGGAAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATCGCACAACAGATGACTTTATTTCATTAAATTCATCTGTTCTCTCAATACCGAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCATGGGTACTGGAAACTACACAGTAAGCCTCCATTTTGCTGAGATAGCATTTACTAATGACAAATCATACAGAAGCCTTGGCAGACGCTTATTTGATGTCTATATTCAGGGAAAGCTGGAGTTGAAAGATTTTAATATTGCAGATGCAGCAGGTGGTGCTGGCAAACCTTTTGTAAAGAAATTTACTGTTCCTGTGACTGATGGTACTATAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCTGCCATTTCTGTTGATCCTGCAGACTTTGTGCCACCATCGGAAGGTGGAAATGCCATATCTGCCGGCACTGTGGTTGGAATTGTGGCTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGAGTCTTGTGGTGGAGAGGTTGCTTTAGAAAGAAAAGCACACTAGAACAAGAGTTGAAGGGTCTAGATCTCGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGCGGTTTTGGTCCAGTTTACAAGGGTGTTCTTGCAGATGGCACTGTAATTGCAGTGAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTAAATGAGATAGGCATGATATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTACTAATTTATGAGTATTTGGAAAATAATAGCCTTGCTCGTGCCTTATTCGGACCCGAAGAATATCAAATGAAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGTATAGCCAGAGGTTTAGCATACCTTCACGAGGAGTCGAGACTTAAGATTGTTCATCGAGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATTTAAACCCCAAGATTTCTGACTTTGGTTTGGCCAAGCTGGATGAAGAAGAAAATACACACATAAGCACCCGGGTTGCTGGAACCTTTGGGTATATGGCACCAGAATACGCCATGCGAGGCTACTTAACTGACAAAGCAGATGTTTATAGCTTTGGGATCGTGGCACTGGAAATAGTTAGTGGTCGAAGCAACACAAGTTTCCGAACCAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGATAGTTTAATAGAGCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAAAGAGAGGCGATGGCAATGATCAATATTGCTCTGCAATGCACGAACGTCATTGCTTCGGACAGACCTGCCATGTCGTCAGTGGTGAGCATGCTGGAAGGGAAGGTTGCTGTGAAAGAGGTGGTTTCAGATCCTAGTGTCTCAAAACAGGATGTGAATGCAATGTGGAGCCAAATTTATCGCCAGAAAGGGCAAACAGGCGAGAGCCAGACGCAAAGTATGTCGATGGATGGACCATGGACTGGTTCTTCAACTACTGCCAGTGATCTCTATCCCATCAACATGGATTCTAAATACTTGGAAAATAGGAACTAG 2967 42.3 MLLARFLTVVFLISLCFISLASGATRLPDDEVEALREIGKTLGKTDWNFTADPCGGLSSGWISSSAQFDPSFSNNVTCNCTFQNNTVCHVTNILLKAQSLQGTLPPQIVRLPFLQELSLLGNRLTGPIPKEIGNISTLVELVLEMNHLSGSVPPELGNLTSLSRLLLTSNNFSGELPPSLARIASLTDFRISDNHFTGPIPTFIQNWTNLGKVAIQASGLSGPIPSEIGLLTTLTDVRISDLTGSSSPFPPLNTLTKLKVLILRNCNITGELPKNLDALTALKTLDFSFNKITGQIPASFEALKKVDSIYLAGNMINGSVPTWMLQQGESIDLSYNKFTQRNGQNNGCQTRNLNLFASSSQDNNNSSGTVSCLANTCGKTSYSLHINCGGKEELINGTTKFDGDTNTGKSSLFFQGGANWGFSNTGSFMDDDRTTDDFISLNSSVLSIPNPELYMRARISPISLTYYAYCMGTGNYTVSLHFAEIAFTNDKSYRSLGRRLFDVYIQGKLELKDFNIADAAGGAGKPFVKKFTVPVTDGTIEIRLFWAGKGTNAIPVRGVYGPLISAISVDPADFVPPSEGGNAISAGTVVGIVAAVVFVIILVLGVLWWRGCFRKKSTLEQELKGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEEYQMKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSFRTKDDCFYLLDHANTLKEKDSLIELVDPRLGSEFNKREAMAMINIALQCTNVIASDRPAMSSVVSMLEGKVAVKEVVSDPSVSKQDVNAMWSQIYRQKGQTGESQTQSMSMDGPWTGSSTTASDLYPINMDSKYLENRN 988
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 38736514 38747026 + Maker00016934 Lcy9g1381 642497
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1381 988 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 614 720 - -
Lcy9g1381 988 Gene3D Ribonuclease Inhibitor 203 374 IPR032675 -
Lcy9g1381 988 Pfam Protein tyrosine and serine/threonine kinase 648 916 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1381 988 CDD STKc_IRAK 651 918 - -
Lcy9g1381 988 FunFam Putative LRR receptor-like serine/threonine-protein kinase 721 928 - -
Lcy9g1381 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 250 341 - -
Lcy9g1381 988 Gene3D Phosphorylase Kinase; domain 1 612 720 - -
Lcy9g1381 988 Gene3D - 379 571 - -
Lcy9g1381 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 932 IPR051824 -
Lcy9g1381 988 SUPERFAMILY L domain-like 86 339 - -
Lcy9g1381 988 ProSiteProfiles Protein kinase domain profile. 645 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1381 988 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Lcy9g1381 988 Pfam Leucine Rich Repeat 161 181 IPR001611 GO:0005515(InterPro)
Lcy9g1381 988 Pfam Leucine Rich Repeat 138 159 IPR001611 GO:0005515(InterPro)
Lcy9g1381 988 Pfam Malectin domain 383 567 IPR021720 -
Lcy9g1381 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1381 988 SUPERFAMILY Galactose-binding domain-like 409 552 IPR008979 -
Lcy9g1381 988 Gene3D Ribonuclease Inhibitor 31 202 IPR032675 -
Lcy9g1381 988 FunFam Nuclear pore complex protein NUP107 36 202 - -
Lcy9g1381 988 Pfam Leucine rich repeat 257 316 IPR001611 GO:0005515(InterPro)
Lcy9g1381 988 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 381 572 - -
Lcy9g1381 988 SUPERFAMILY Protein kinase-like (PK-like) 629 936 IPR011009 -
Lcy9g1381 988 Gene3D Transferase(Phosphotransferase) domain 1 721 937 - -
Lcy9g1381 988 SMART serkin_6 645 916 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1381 988 MobiDBLite consensus disorder prediction 947 973 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0747 Lcy-Chr4:8988227 Lcy9g1381 Lcy-Chr9:38736514 2.04E-14 dispersed
Lcy9g1381 Lcy-Chr9:38736514 Lcy9g1385 Lcy-Chr9:38801635 0 dispersed
Lcy9g1386 Lcy-Chr9:38818230 Lcy9g1381 Lcy-Chr9:38736514 2.85E-17 dispersed
Lcy9g1380 Lcy-Chr9:38709991 Lcy9g1381 Lcy-Chr9:38736514 1.54E-244 tandem
Lcy5g1982 Lcy-Chr5:42755047 Lcy9g1381 Lcy-Chr9:38736514 8.32E-77 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66195 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1381 - - - 0.0