Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1384 ATGTTTGTGGGTCGATGCCTCGCCGTCGTTTTTCTCTTCTCCCTCGCTTCCGACGCCGCTCGGCAGCCTCGGCTGCCGGACGAGGAAGTGGAGGCGCTGAAGGAGATCGGAAAGACATTGGGGAAGGCGGACTGGAATTTCTCGGGCGATCCATGCGGCGGTTTGAGTAGCGGTTGGATATCGGATTCTTCATTATTCGACACTAATTTTGTTAATAATGTCAGCTGCACCTGCACCTTCTACCCAAATACAATCTGTCACGTCACTAACATTGTTCTAAAGGGGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATAGTGAGGTTGCCTTTCCTGCGGGAACTTGATCTCACCCGCAACTATCTCAGCGGCTCAATTCCTCCAGAATGGGGTTCCACCAAGCTCGTCAAGATTTGCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTGTTACAGAGTTGGTCCTGGAAATGAATCACTTCTCTGGATCAGTACCTCCCGAACTTGGAAATTTGACCAGGTTATCAAGATTACTTCTTACCTCAAACAACTTTTATGGGGAGCTCCCACCTTCACTGGCAAGGATAACCTCATTGAGGGACTTCCGCATCACTGATAATAACTTCACAGGGCCAATACCCAAGTTTATACAGAACTGGACGAATCTTCAAAGAATAGCTATTCAGGCAAGCGGGTTGAGTGGACCAATTCCTTCTGAAATTGGACTTTTGACAGAATTAACCGATCTGCGAATTAGTGACTTGAATGGAGATTCATCACCCTTTCCACCCCTTGCTAATTTGACAAAATTGAAAACCCTGATATTGAGAAGTTGCAATATAATTGGGGAACTGCCCGACAATCTTGATGGGTTGACAGCATTGAAACTCTCAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCTTTGAAAGGAGGGGATAATATGTTTTTAACTGGAAACTTGCTAAATGGTTCCGTGCCCACTTGGATGCTACTAGAACAAGGAATAAACATTGATCTCTCTTATAACAAATTTACTCAGACAAATGATCTGAACGCTGGTTGTCAACAACAAAGAGTAAACCTTTTTGCGAGCTCTTCAGAGGACAGTAATTCGAGTGGAACGGTTTCATGCCTAGCAGGCGCTTGTCCAGAACCTTGGTACTCTGTCCATATCAACTGTGGTGGGAATGATGAAATAATCGACGGAACCTTTTTTAATGGAGACACAATTGCTGGCACATCATCATTGTTTTTTCAAGAACGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACAATGGTCTCGCAGCAGACTACTTTATTGCACTAAATTCATCTCTCTCAATGCCAATTCCTGAATTGTACACGAGGGCACGCATTTCTCCCATCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACAGTAAGCCTCCATTTTGCCGAGATAATGTTTACTGATGACAAATCATACGGAAGCCTTGGCAGACGCGTATTTGATGTCTACATTCAGAGAAAGCTGGAGTTGAAGGATTTTAATATTGCTGATGCAGCAGGTGGTGTAGGCAAACCTATTGTAAAGAAATTCACTGTTTCTGTGACTGATGGTACTGTAGAGATCCGCCTATTTTGGGCCGGGAAGGGGACAAATGCAATCCCTGTTAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTATTGATCCTGCAGACTTTGTGCCACCATCAGAAGGTGGAGGAAATGGCTTATCTGCTGGTGTAGTGGTTGGAATTGTGGCTGCTGTGGTCTTTATTATCATCTCAGTTCTTGGAGTCTTGTGGTGGGGAGGCTGCCTAAGAAAGAATAGCACACTCGAACTAGAGTTGAAGGGTATAGATCTAGGAACACGTTCATTTTCATTAAGGCAAATTAGAGCTGCCACCAATAATTTTGATGGTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTGTAGATGGCACCGTAATTGCAGTGAAGCAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTAAATGAGATAGGTCTGATATCTGCATTGCAACACCCTCATCTAGTGGAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTAATATACGAGTATATGGAAAATAATAGCCTTGCTCGTGCTTTATTTGGACCTGAAGAATCTCAACTAAAATTGGATTGGACAACTAGGCACAAGATCTGTGTTGGTATAGCTAGAGGTTTAGCATACCTTCACGAGGAGTCAAGACTTAAAATTGTTCATCGAGACATCAAAGCTACCAATATTTTGCTTGATAAAAATCTCAACTCCAAGATTTCTGACTTCGGTTTGGCCAAGTTGGATGACGAAGAAGAAAATACACACATTAGCACCCGTGTTGCTGGAACCTATGGGTATATGGCACCAGAATACGCCTTGCGAGGCCACTTAACTGACAAAGCAGATGTTTATAGCTTTGGCATCGTGGCGTTGGAAATAGTTGGTGGTCGAAGCAACTTAAGTTTCGAAGCCAAGGCAGATTGCTTTCACCTTCTTGACCATGCAATTGCTTTAAAAAAGAGAGACAGTTTATTAGAGTTTGTCGATCCACGATTAGGCTCTAAATTCAACAAGAAAGAGGCAATGGCGATGATTAATATTGCTCTCCAATGCACAAACGTCACTCCTGCAGACAGACCAACCATGTCATCAGTTGTGAGCATGCTGGAAGGGAAGGTTGTTGTGAAGGAGGTGGTTTCAAGTCCTTGCGTCTCGAAACAAGATGAGAATGCAAGGTGGCGCCAAATTTGTCGCCAGAAAGAGCAAACTGCAGGCAAGAGCCTGACGCAAAGTGTGGCGACAGAAGGACCATGGACTGGTTCTTCGAATACTGACAGTGATATATATCCCATCCTCTTAGATTCTAAATACTTGGAGAGTAGGAACTAG 3036 43.51 MFVGRCLAVVFLFSLASDAARQPRLPDEEVEALKEIGKTLGKADWNFSGDPCGGLSSGWISDSSLFDTNFVNNVSCTCTFYPNTICHVTNIVLKGQSLQGTLPPQIVRLPFLRELDLTRNYLSGSIPPEWGSTKLVKICLLGNRLTGPIPKEIGNISTVTELVLEMNHFSGSVPPELGNLTRLSRLLLTSNNFYGELPPSLARITSLRDFRITDNNFTGPIPKFIQNWTNLQRIAIQASGLSGPIPSEIGLLTELTDLRISDLNGDSSPFPPLANLTKLKTLILRSCNIIGELPDNLDGLTALKLSDFSFNKITGPIPASFEALKGGDNMFLTGNLLNGSVPTWMLLEQGINIDLSYNKFTQTNDLNAGCQQQRVNLFASSSEDSNSSGTVSCLAGACPEPWYSVHINCGGNDEIIDGTFFNGDTIAGTSSLFFQERGANWGFSNTGSFMDNGLAADYFIALNSSLSMPIPELYTRARISPISLTYYAYCMGNGNYTVSLHFAEIMFTDDKSYGSLGRRVFDVYIQRKLELKDFNIADAAGGVGKPIVKKFTVSVTDGTVEIRLFWAGKGTNAIPVRGVYGPLISAISIDPADFVPPSEGGGNGLSAGVVVGIVAAVVFIIISVLGVLWWGGCLRKNSTLELELKGIDLGTRSFSLRQIRAATNNFDGANKIGEGGFGPVYKGVLVDGTVIAVKQLSSKSKQGNREFVNEIGLISALQHPHLVELYGCCIEGNQLLLIYEYMENNSLARALFGPEESQLKLDWTTRHKICVGIARGLAYLHEESRLKIVHRDIKATNILLDKNLNSKISDFGLAKLDDEEENTHISTRVAGTYGYMAPEYALRGHLTDKADVYSFGIVALEIVGGRSNLSFEAKADCFHLLDHAIALKKRDSLLEFVDPRLGSKFNKKEAMAMINIALQCTNVTPADRPTMSSVVSMLEGKVVVKEVVSSPCVSKQDENARWRQICRQKEQTAGKSLTQSVATEGPWTGSSNTDSDIYPILLDSKYLESRN 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38787834 38798179 + Maker00016839 Lcy9g1384 642500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1384 1011 Gene3D Ribonuclease Inhibitor 227 384 IPR032675 -
Lcy9g1384 1011 CDD STKc_IRAK 672 938 - -
Lcy9g1384 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1384 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 950 - -
Lcy9g1384 1011 SUPERFAMILY L domain-like 67 344 - -
Lcy9g1384 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 26 264 - -
Lcy9g1384 1011 Pfam Malectin domain 404 587 IPR021720 -
Lcy9g1384 1011 Gene3D - 403 591 - -
Lcy9g1384 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 592 - -
Lcy9g1384 1011 SUPERFAMILY Protein kinase-like (PK-like) 650 939 IPR011009 -
Lcy9g1384 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 952 IPR051824 -
Lcy9g1384 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Lcy9g1384 1011 Gene3D Transferase(Phosphotransferase) domain 1 742 954 - -
Lcy9g1384 1011 Gene3D Phosphorylase Kinase; domain 1 633 741 - -
Lcy9g1384 1011 SMART serkin_6 666 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1384 1011 Pfam Protein tyrosine and serine/threonine kinase 670 938 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1384 1011 Gene3D Ribonuclease Inhibitor 38 157 IPR032675 -
Lcy9g1384 1011 Gene3D Ribonuclease Inhibitor 158 226 IPR032675 -
Lcy9g1384 1011 Pfam Leucine Rich Repeat 112 131 IPR001611 GO:0005515(InterPro)
Lcy9g1384 1011 Pfam Leucine Rich Repeat 278 300 IPR001611 GO:0005515(InterPro)
Lcy9g1384 1011 ProSiteProfiles Protein kinase domain profile. 666 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1380 Lcy-Chr9:38709991 Lcy9g1384 Lcy-Chr9:38787834 8.97E-250 dispersed
Lcy9g1384 Lcy-Chr9:38787834 Lcy9g1396 Lcy-Chr9:38975458 0 dispersed
Lcy9g1389 Lcy-Chr9:38883161 Lcy9g1384 Lcy-Chr9:38787834 5.29E-37 dispersed
Lcy9g1383 Lcy-Chr9:38764957 Lcy9g1384 Lcy-Chr9:38787834 4.98E-14 tandem
Lcy9g1384 Lcy-Chr9:38787834 Lcy9g1385 Lcy-Chr9:38801635 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66196 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1384 - - - 0.0