Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1385 ATGGCCCTTTCCCGTTCCTCTAGTAACGAAGCCTCAGTTTCGGATTTTGGAAAAATCAGAAGGTGTTGGGAGGGTCTCTGGAATTCAAAAGTGTATCCTCGGGCCAAGATTTGTGTGTGGAAGATTTTGAATAATATCCTCCCCACTTCTCCTAACCTCCAAAGGCTTGGAATTGACTCCAATCCTTTATGTGAGGGATTGGTCTGTCATGGACCACTGGGATTGGATCATGGGAACAAATGCAAGCATGATTCCAGTCTTCCCAAGCCATCGAAGGAGCAAATCTCTAATTCTATTTCCAGATATATCTCAGAGATTAAAGAGGGAGCGATTACGTACCAATTGAAGTCGCTTGATCTGCGAGGCGAGAACCACCTGAGTCAAGGAGCCTGGAATCCGCCGCCTCTCAAATGTTGGAAGCTCAATTCTGATGCTTCTTGGAACGACAAGGATAAAAGAAGTGGGTTAGGTTGGATTGTTCGTGACTCCGGCAGCAGAAAAGAAGACTTTTCGAATTCTATAGTCTTCGTGGATGCCATCTTGGAGTTGGCTCAATCCTTGGGGGTGCTCCTGTTCAAGCATTGTCCAAGGTCTCAAAACGGAGTTGCTCACGCTTTAGCTCGTGTAGGCGCTGGCCATAACTCCATTTCCAATTTTTTTTTCTGGGTAGAGGCTGCCTTCCATGCTGGAAGGAGATGTGCTGTGCTTAGAGACGATTTTGGACTGAACCGAGTGGAACTAGGGCGGACCGGAGCAGTGGGGACCGAACAGAGGAGGAAGGAACTCGGCCCACACGAGTGGGCCGAGTGGTCGACCTCGGCCTTGGGCCTTGACCGACCATTGGATTGGGCCGATTTTGGCTCTCCTTCCTCCGGAGTCCGCTTCCAGTCCTACTTAGTCCTTGGATTATGGGGTGGTCCAGAATCAGCCACAACATCTTCCATCCTACATATTTTCCTAGCCATGTTTGTGGCTCGATTCCTCGCCGTCGTTTTTCTCTCCTCTCTCGCTTCCAACGCCGGTCGGCTGCCGGACGACGAAGTTGAGGCGTTGAGGGAGATTGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCCGATCCATGCGGCGGTTTGAGTAGCCGTTGGATATCGAATTCTTCATTCGATTCTTATTATGCTAATTATGTCACCTGCAATTGCACGTTCCAGAAAAATACACTCTGTCACGTCATTACCATTAGTCTAAAGAAGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATAGTGAGATTGCCTTTCTTGCGGGAACTTTCCCTTCTTGGAAATCGATTGACTGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGGTCTTGGAAATGAATCATTTATCTGGAAGCATACCTCCAGAACTTGGAAATTTGTCCAGATTATCAAGATTACTTCTTACCACAAACAACTTTTCTGGAAAGCTCCCACCTTCTCTGGCAAGGTTAACCTCATTGAAAGACTTTCGAATTAGTGATAATCACTTCACAGGACCAATACCTAAATTTATGCAGAGTTGGAGGGATCTTGGAAAACTGAGAATCAGTGACTTGAATGGAGGTTCATCACCCTTTCCGCCCATTAATACTTTGACAAGATTGAGAGTCCTGATACTGAGGAATTGCAATATAACTGGAGTGTTGCCCGACAATCTTAATGGATTGACAGCATTGCAAAACTTAGATTTCAGCTTCAATAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCTTTGATAAAAGTGGATAGCATATATTTAACTGGAAACTTACTAAATGGATCAGTGCCTCCTTGGATGCTACAGGATGGAGAAAACATTGATCTTTCTTATAACAAATTTACTGAGAGTAATATTCAGAACACTGGTTGTGAATCACGAAGTTTAAATTTGTTTGCGAGCTCAGAACAGGACAATAGTTTAAGTGGAAAAGTTTCATGTTTGGCGGACGCTTGTGAAAAAACTTGGTACTCTGTCCATATCAACTGTGGTGGGAAGGAAGAATTAATTAATAGAACAACCAAATTTGATGGAGACACAAACACTGGAAAATCATCATTGTTTTTTCAAGGTGGAGCGAATTGGGGATTTAGCAACACTGGTAATTTTATGGACTTAGATCGCTCAACAGAGGACTTTATTGCACTAAATTCATCTCCTCTCTCAATGCCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACATATTATGCATTTTGCATGGGTAATGGATACTACACTGTAAGCCTCCATTTTTCCGAGATAATGTTTACTGATGACAAAACATACAGAAGCCTTGGCAGACGCATTTTTGATGTCTACATTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTGTTGTAAAGAAATTCAATGTTTTTGTGGCAAATGGTACTATAGAGATCCGCCTATTTTGGTCTGGGAAGGGGACAGTTGCAATCCCTGTGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCCGAATTTGTGCCACCATCAGAAGGTGGAAATGTCATAGCTGTCGGTGCAATGGTTGGAATCGTGGCAGCTGTGGTCTTTGTTTCAATCTCGGTTCTTGGAGTCTTGTGGTGGAGAGGCCACCTAAGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGACCTAGAATTAGGAACAGCTTCGTTTTCATTAAGACAAATTAGAGCTGCGACTAACAATTTTGATGATGCCAATAAGATTGGAGAAGGTGGTTTTGGTTCTGTTTACAAGGGTGTTCTTGCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAAGGAAATCGCGAATTTGTGAATGAGATAGGCATGGTATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTTTGGATGTTGTATCGAAGGAGATCAACTTTTGCTAGTATATGAGTATCTAGAAAATAATAGCCTTGCTCGTGCCTTATTTGGACCCGAAGAATATCAATTGAAATTGGATTGGCCAACTAGGCGCAAGATTTGTGTTGGTATAGCTAAAGGTTTAGCGTATCTTCATGATGAGTCAAGACTAAAAATTGTTCACCGAGACATCAAAGCTACCAATGTTCTACTTGATAAAAATCTCAACTCTAAGATTTCCGACTTCGGTTTGGCCAAGTTAGATGAAGAACAAAAAACACACATCAGCACACGAGTCGCTGGAACCTTTGGGTATATGGCACCAGAATATGCCATGCGAGGCCACTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATCGTGGCATTAGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCAAACTAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATGATTTAAGAGAGAACGACAGTTTACTAGAGCTTGTCGATCCACGATTAGGCTCTGAATTCGACAAGACAGAAGTAATGACGATGATCAATGTTGCTCTCCAGTGCACTAATGTCATTGCTGCGGATAGACCATCCATGTCAGCAGTAGTGAGCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGATGGTTTCAGATCCTAATATCTCAAAACAAGATGTGAATGCAATGTGGTGTCAAATTTATCGCCAAAAAGGGAAAACGAATGAGAGCCCGACGCAAAGTGTATCGGCGGATGGACCAAAGACTGGTTCTTCAAGTACTGACAGTGATATACATCCCATACTCATGGATTCTAAATACTTGGAGAGTAGGAACTAG 3834 43.27 MALSRSSSNEASVSDFGKIRRCWEGLWNSKVYPRAKICVWKILNNILPTSPNLQRLGIDSNPLCEGLVCHGPLGLDHGNKCKHDSSLPKPSKEQISNSISRYISEIKEGAITYQLKSLDLRGENHLSQGAWNPPPLKCWKLNSDASWNDKDKRSGLGWIVRDSGSRKEDFSNSIVFVDAILELAQSLGVLLFKHCPRSQNGVAHALARVGAGHNSISNFFFWVEAAFHAGRRCAVLRDDFGLNRVELGRTGAVGTEQRRKELGPHEWAEWSTSALGLDRPLDWADFGSPSSGVRFQSYLVLGLWGGPESATTSSILHIFLAMFVARFLAVVFLSSLASNAGRLPDDEVEALREIGKTLGKTDWNFTADPCGGLSSRWISNSSFDSYYANYVTCNCTFQKNTLCHVITISLKKQSLQGTLPPQIVRLPFLRELSLLGNRLTGPIPKEIGNISTLVELVLEMNHLSGSIPPELGNLSRLSRLLLTTNNFSGKLPPSLARLTSLKDFRISDNHFTGPIPKFMQSWRDLGKLRISDLNGGSSPFPPINTLTRLRVLILRNCNITGVLPDNLNGLTALQNLDFSFNKITGPIPASFEALIKVDSIYLTGNLLNGSVPPWMLQDGENIDLSYNKFTESNIQNTGCESRSLNLFASSEQDNSLSGKVSCLADACEKTWYSVHINCGGKEELINRTTKFDGDTNTGKSSLFFQGGANWGFSNTGNFMDLDRSTEDFIALNSSPLSMPNPELYMRARISPISLTYYAFCMGNGYYTVSLHFSEIMFTDDKTYRSLGRRIFDVYIQGKLELKDFNIADAAGGVGKPVVKKFNVFVANGTIEIRLFWSGKGTVAIPVRGVYGPLISAISVDPEFVPPSEGGNVIAVGAMVGIVAAVVFVSISVLGVLWWRGHLRKKSTLEQELKDLELGTASFSLRQIRAATNNFDDANKIGEGGFGSVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMVSALQHPHLVKLFGCCIEGDQLLLVYEYLENNSLARALFGPEEYQLKLDWPTRRKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNSKISDFGLAKLDEEQKTHISTRVAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVGGRSNTSFQTKDDCFYLLDHANDLRENDSLLELVDPRLGSEFDKTEVMTMINVALQCTNVIAADRPSMSAVVSMLEGKVAVKEMVSDPNISKQDVNAMWCQIYRQKGKTNESPTQSVSADGPKTGSSSTDSDIHPILMDSKYLESRN 1277
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 38801635 38816323 + Maker00016659 Lcy9g1385 642501
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1385 1277 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1010 1217 - -
Lcy9g1385 1277 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515(InterPro)
Lcy9g1385 1277 Pfam Leucine Rich Repeat 429 449 IPR001611 GO:0005515(InterPro)
Lcy9g1385 1277 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Lcy9g1385 1277 SMART serkin_6 934 1205 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1385 1277 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 329 1218 IPR051824 -
Lcy9g1385 1277 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 903 1009 - -
Lcy9g1385 1277 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 671 862 - -
Lcy9g1385 1277 FunFam Nuclear pore complex protein NUP107 347 517 - -
Lcy9g1385 1277 CDD STKc_IRAK 940 1207 - -
Lcy9g1385 1277 SUPERFAMILY L domain-like 391 631 - -
Lcy9g1385 1277 Gene3D Ribonuclease Inhibitor 521 645 IPR032675 -
Lcy9g1385 1277 Gene3D Ribonuclease Inhibitor 347 520 IPR032675 -
Lcy9g1385 1277 Gene3D Transferase(Phosphotransferase) domain 1 1010 1221 - -
Lcy9g1385 1277 MobiDBLite consensus disorder prediction 1237 1277 - -
Lcy9g1385 1277 Pfam Protein tyrosine and serine/threonine kinase 938 1205 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1385 1277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1056 1068 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1385 1277 MobiDBLite consensus disorder prediction 1237 1264 - -
Lcy9g1385 1277 ProSitePatterns Protein kinases ATP-binding region signature. 940 962 IPR017441 GO:0005524(InterPro)
Lcy9g1385 1277 Gene3D - 671 861 - -
Lcy9g1385 1277 SUPERFAMILY Protein kinase-like (PK-like) 918 1220 IPR011009 -
Lcy9g1385 1277 ProSiteProfiles Protein kinase domain profile. 934 1220 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1385 1277 Gene3D Phosphorylase Kinase; domain 1 898 1009 - -
Lcy9g1385 1277 Pfam Malectin domain 673 857 IPR021720 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0241 Lcy-Chr6:2123257 Lcy9g1385 Lcy-Chr9:38801635 2.34E-06 dispersed
Lcy9g1381 Lcy-Chr9:38736514 Lcy9g1385 Lcy-Chr9:38801635 0 dispersed
Lcy9g1385 Lcy-Chr9:38801635 Lcy9g1396 Lcy-Chr9:38975458 0 dispersed
Lcy9g1385 Lcy-Chr9:38801635 Lcy9g1387 Lcy-Chr9:38822568 1.41e-310 proximal
Lcy9g1384 Lcy-Chr9:38787834 Lcy9g1385 Lcy-Chr9:38801635 0 tandem
Lcy5g1985 Lcy-Chr5:42793925 Lcy9g1385 Lcy-Chr9:38801635 8.89E-65 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66197 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1385 - - - 0.0