Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1385 | ATGGCCCTTTCCCGTTCCTCTAGTAACGAAGCCTCAGTTTCGGATTTTGGAAAAATCAGAAGGTGTTGGGAGGGTCTCTGGAATTCAAAAGTGTATCCTCGGGCCAAGATTTGTGTGTGGAAGATTTTGAATAATATCCTCCCCACTTCTCCTAACCTCCAAAGGCTTGGAATTGACTCCAATCCTTTATGTGAGGGATTGGTCTGTCATGGACCACTGGGATTGGATCATGGGAACAAATGCAAGCATGATTCCAGTCTTCCCAAGCCATCGAAGGAGCAAATCTCTAATTCTATTTCCAGATATATCTCAGAGATTAAAGAGGGAGCGATTACGTACCAATTGAAGTCGCTTGATCTGCGAGGCGAGAACCACCTGAGTCAAGGAGCCTGGAATCCGCCGCCTCTCAAATGTTGGAAGCTCAATTCTGATGCTTCTTGGAACGACAAGGATAAAAGAAGTGGGTTAGGTTGGATTGTTCGTGACTCCGGCAGCAGAAAAGAAGACTTTTCGAATTCTATAGTCTTCGTGGATGCCATCTTGGAGTTGGCTCAATCCTTGGGGGTGCTCCTGTTCAAGCATTGTCCAAGGTCTCAAAACGGAGTTGCTCACGCTTTAGCTCGTGTAGGCGCTGGCCATAACTCCATTTCCAATTTTTTTTTCTGGGTAGAGGCTGCCTTCCATGCTGGAAGGAGATGTGCTGTGCTTAGAGACGATTTTGGACTGAACCGAGTGGAACTAGGGCGGACCGGAGCAGTGGGGACCGAACAGAGGAGGAAGGAACTCGGCCCACACGAGTGGGCCGAGTGGTCGACCTCGGCCTTGGGCCTTGACCGACCATTGGATTGGGCCGATTTTGGCTCTCCTTCCTCCGGAGTCCGCTTCCAGTCCTACTTAGTCCTTGGATTATGGGGTGGTCCAGAATCAGCCACAACATCTTCCATCCTACATATTTTCCTAGCCATGTTTGTGGCTCGATTCCTCGCCGTCGTTTTTCTCTCCTCTCTCGCTTCCAACGCCGGTCGGCTGCCGGACGACGAAGTTGAGGCGTTGAGGGAGATTGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCCGATCCATGCGGCGGTTTGAGTAGCCGTTGGATATCGAATTCTTCATTCGATTCTTATTATGCTAATTATGTCACCTGCAATTGCACGTTCCAGAAAAATACACTCTGTCACGTCATTACCATTAGTCTAAAGAAGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATAGTGAGATTGCCTTTCTTGCGGGAACTTTCCCTTCTTGGAAATCGATTGACTGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGGTCTTGGAAATGAATCATTTATCTGGAAGCATACCTCCAGAACTTGGAAATTTGTCCAGATTATCAAGATTACTTCTTACCACAAACAACTTTTCTGGAAAGCTCCCACCTTCTCTGGCAAGGTTAACCTCATTGAAAGACTTTCGAATTAGTGATAATCACTTCACAGGACCAATACCTAAATTTATGCAGAGTTGGAGGGATCTTGGAAAACTGAGAATCAGTGACTTGAATGGAGGTTCATCACCCTTTCCGCCCATTAATACTTTGACAAGATTGAGAGTCCTGATACTGAGGAATTGCAATATAACTGGAGTGTTGCCCGACAATCTTAATGGATTGACAGCATTGCAAAACTTAGATTTCAGCTTCAATAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCTTTGATAAAAGTGGATAGCATATATTTAACTGGAAACTTACTAAATGGATCAGTGCCTCCTTGGATGCTACAGGATGGAGAAAACATTGATCTTTCTTATAACAAATTTACTGAGAGTAATATTCAGAACACTGGTTGTGAATCACGAAGTTTAAATTTGTTTGCGAGCTCAGAACAGGACAATAGTTTAAGTGGAAAAGTTTCATGTTTGGCGGACGCTTGTGAAAAAACTTGGTACTCTGTCCATATCAACTGTGGTGGGAAGGAAGAATTAATTAATAGAACAACCAAATTTGATGGAGACACAAACACTGGAAAATCATCATTGTTTTTTCAAGGTGGAGCGAATTGGGGATTTAGCAACACTGGTAATTTTATGGACTTAGATCGCTCAACAGAGGACTTTATTGCACTAAATTCATCTCCTCTCTCAATGCCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTACATATTATGCATTTTGCATGGGTAATGGATACTACACTGTAAGCCTCCATTTTTCCGAGATAATGTTTACTGATGACAAAACATACAGAAGCCTTGGCAGACGCATTTTTGATGTCTACATTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTGTTGTAAAGAAATTCAATGTTTTTGTGGCAAATGGTACTATAGAGATCCGCCTATTTTGGTCTGGGAAGGGGACAGTTGCAATCCCTGTGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCCGAATTTGTGCCACCATCAGAAGGTGGAAATGTCATAGCTGTCGGTGCAATGGTTGGAATCGTGGCAGCTGTGGTCTTTGTTTCAATCTCGGTTCTTGGAGTCTTGTGGTGGAGAGGCCACCTAAGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGACCTAGAATTAGGAACAGCTTCGTTTTCATTAAGACAAATTAGAGCTGCGACTAACAATTTTGATGATGCCAATAAGATTGGAGAAGGTGGTTTTGGTTCTGTTTACAAGGGTGTTCTTGCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAAGGAAATCGCGAATTTGTGAATGAGATAGGCATGGTATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTTTGGATGTTGTATCGAAGGAGATCAACTTTTGCTAGTATATGAGTATCTAGAAAATAATAGCCTTGCTCGTGCCTTATTTGGACCCGAAGAATATCAATTGAAATTGGATTGGCCAACTAGGCGCAAGATTTGTGTTGGTATAGCTAAAGGTTTAGCGTATCTTCATGATGAGTCAAGACTAAAAATTGTTCACCGAGACATCAAAGCTACCAATGTTCTACTTGATAAAAATCTCAACTCTAAGATTTCCGACTTCGGTTTGGCCAAGTTAGATGAAGAACAAAAAACACACATCAGCACACGAGTCGCTGGAACCTTTGGGTATATGGCACCAGAATATGCCATGCGAGGCCACTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATCGTGGCATTAGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCAAACTAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATGATTTAAGAGAGAACGACAGTTTACTAGAGCTTGTCGATCCACGATTAGGCTCTGAATTCGACAAGACAGAAGTAATGACGATGATCAATGTTGCTCTCCAGTGCACTAATGTCATTGCTGCGGATAGACCATCCATGTCAGCAGTAGTGAGCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGATGGTTTCAGATCCTAATATCTCAAAACAAGATGTGAATGCAATGTGGTGTCAAATTTATCGCCAAAAAGGGAAAACGAATGAGAGCCCGACGCAAAGTGTATCGGCGGATGGACCAAAGACTGGTTCTTCAAGTACTGACAGTGATATACATCCCATACTCATGGATTCTAAATACTTGGAGAGTAGGAACTAG | 3834 | 43.27 | MALSRSSSNEASVSDFGKIRRCWEGLWNSKVYPRAKICVWKILNNILPTSPNLQRLGIDSNPLCEGLVCHGPLGLDHGNKCKHDSSLPKPSKEQISNSISRYISEIKEGAITYQLKSLDLRGENHLSQGAWNPPPLKCWKLNSDASWNDKDKRSGLGWIVRDSGSRKEDFSNSIVFVDAILELAQSLGVLLFKHCPRSQNGVAHALARVGAGHNSISNFFFWVEAAFHAGRRCAVLRDDFGLNRVELGRTGAVGTEQRRKELGPHEWAEWSTSALGLDRPLDWADFGSPSSGVRFQSYLVLGLWGGPESATTSSILHIFLAMFVARFLAVVFLSSLASNAGRLPDDEVEALREIGKTLGKTDWNFTADPCGGLSSRWISNSSFDSYYANYVTCNCTFQKNTLCHVITISLKKQSLQGTLPPQIVRLPFLRELSLLGNRLTGPIPKEIGNISTLVELVLEMNHLSGSIPPELGNLSRLSRLLLTTNNFSGKLPPSLARLTSLKDFRISDNHFTGPIPKFMQSWRDLGKLRISDLNGGSSPFPPINTLTRLRVLILRNCNITGVLPDNLNGLTALQNLDFSFNKITGPIPASFEALIKVDSIYLTGNLLNGSVPPWMLQDGENIDLSYNKFTESNIQNTGCESRSLNLFASSEQDNSLSGKVSCLADACEKTWYSVHINCGGKEELINRTTKFDGDTNTGKSSLFFQGGANWGFSNTGNFMDLDRSTEDFIALNSSPLSMPNPELYMRARISPISLTYYAFCMGNGYYTVSLHFSEIMFTDDKTYRSLGRRIFDVYIQGKLELKDFNIADAAGGVGKPVVKKFNVFVANGTIEIRLFWSGKGTVAIPVRGVYGPLISAISVDPEFVPPSEGGNVIAVGAMVGIVAAVVFVSISVLGVLWWRGHLRKKSTLEQELKDLELGTASFSLRQIRAATNNFDDANKIGEGGFGSVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMVSALQHPHLVKLFGCCIEGDQLLLVYEYLENNSLARALFGPEEYQLKLDWPTRRKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNSKISDFGLAKLDEEQKTHISTRVAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVGGRSNTSFQTKDDCFYLLDHANDLRENDSLLELVDPRLGSEFDKTEVMTMINVALQCTNVIAADRPSMSAVVSMLEGKVAVKEMVSDPNISKQDVNAMWCQIYRQKGKTNESPTQSVSADGPKTGSSSTDSDIHPILMDSKYLESRN | 1277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38801635 | 38816323 | + | Maker00016659 | Lcy9g1385 | 642501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1385 | 1277 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 1010 | 1217 | - | - | |
Lcy9g1385 | 1277 | Pfam | Leucine rich repeat | 548 | 607 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1385 | 1277 | Pfam | Leucine Rich Repeat | 429 | 449 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1385 | 1277 | Pfam | Leucine Rich Repeat | 453 | 474 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1385 | 1277 | SMART | serkin_6 | 934 | 1205 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1385 | 1277 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 329 | 1218 | IPR051824 | - | |
Lcy9g1385 | 1277 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 903 | 1009 | - | - | |
Lcy9g1385 | 1277 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 671 | 862 | - | - | |
Lcy9g1385 | 1277 | FunFam | Nuclear pore complex protein NUP107 | 347 | 517 | - | - | |
Lcy9g1385 | 1277 | CDD | STKc_IRAK | 940 | 1207 | - | - | |
Lcy9g1385 | 1277 | SUPERFAMILY | L domain-like | 391 | 631 | - | - | |
Lcy9g1385 | 1277 | Gene3D | Ribonuclease Inhibitor | 521 | 645 | IPR032675 | - | |
Lcy9g1385 | 1277 | Gene3D | Ribonuclease Inhibitor | 347 | 520 | IPR032675 | - | |
Lcy9g1385 | 1277 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1010 | 1221 | - | - | |
Lcy9g1385 | 1277 | MobiDBLite | consensus disorder prediction | 1237 | 1277 | - | - | |
Lcy9g1385 | 1277 | Pfam | Protein tyrosine and serine/threonine kinase | 938 | 1205 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1385 | 1277 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1056 | 1068 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1385 | 1277 | MobiDBLite | consensus disorder prediction | 1237 | 1264 | - | - | |
Lcy9g1385 | 1277 | ProSitePatterns | Protein kinases ATP-binding region signature. | 940 | 962 | IPR017441 | GO:0005524(InterPro) | |
Lcy9g1385 | 1277 | Gene3D | - | 671 | 861 | - | - | |
Lcy9g1385 | 1277 | SUPERFAMILY | Protein kinase-like (PK-like) | 918 | 1220 | IPR011009 | - | |
Lcy9g1385 | 1277 | ProSiteProfiles | Protein kinase domain profile. | 934 | 1220 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1385 | 1277 | Gene3D | Phosphorylase Kinase; domain 1 | 898 | 1009 | - | - | |
Lcy9g1385 | 1277 | Pfam | Malectin domain | 673 | 857 | IPR021720 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0241 | Lcy-Chr6:2123257 | Lcy9g1385 | Lcy-Chr9:38801635 | 2.34E-06 | dispersed | |
Lcy9g1381 | Lcy-Chr9:38736514 | Lcy9g1385 | Lcy-Chr9:38801635 | 0 | dispersed | |
Lcy9g1385 | Lcy-Chr9:38801635 | Lcy9g1396 | Lcy-Chr9:38975458 | 0 | dispersed | |
Lcy9g1385 | Lcy-Chr9:38801635 | Lcy9g1387 | Lcy-Chr9:38822568 | 1.41e-310 | proximal | |
Lcy9g1384 | Lcy-Chr9:38787834 | Lcy9g1385 | Lcy-Chr9:38801635 | 0 | tandem | |
Lcy5g1985 | Lcy-Chr5:42793925 | Lcy9g1385 | Lcy-Chr9:38801635 | 8.89E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66197 | None | None | None | None | Lcy | PK |
Pathway information
