Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1387 | ATGTCGTCGTCACAGTTCCTTGCTTGGAAATCGGCTCACGGGCTCCATTCCACACGAGATTGGAAATATCACTACTCTTACAACGTTGGTCTTGGAAGCCAATCATCTATCGGGAACTTTACCTTCGACACTTGGGAATTTGTTCAACTTGGAAATATTGTAGTTTTGCACCGTTGGATACTTCTTGCCTCCAATAACTTTACTGGACAGTTGCCGACAGCTCTAGGAAAGCTGACCTCGTTGATCTCATTAAAGATTCAAGCAAGTGGGTTGAGTGGGCCTCTTCCTTCTGAATTGGGACTTTTGACCAAATTAATCGACCTAAGAATCAGTGACTTGAACGGAGCTTCATCACCCTTTCCACCTCTAAATAATTTGACCAATATCAGATTTCTGATATTAAGAAGTTGCAATATCGTGGGATTATTGCCCGATTATCTAGATGGGATGCAATCTTTGGAACTCTTAGACCTCAGCTTTAACAAAATAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGATGATGTTGATAATATATTTTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAATGGATGTTGCTCAGAGGAAATAGCATTGATCTCTCTTACAATAAATTTAACCCACTATCTACAGGCTGCCAATCACGAGATACAAACCTATTTGCAAGCTCTGCATTGGACAATAATTCTAATCTTGTTTCTTGTTTGCCGGACCACATTTGTTCTGATGAGAATCAATATAGTCTCCATATAAATTGTGGTGGCAAAGAAGAAGTTATCAATGGTACAAAGTTCGAAGGAGATGAAGACACAGGCAAGCCGTCTGTGTTTGTCTCAAGCACAAAAAATTGGGCATTTAGCAACACTGGAATATTTATGGAGGATAGTCGTCTTTCATTCGACTATATTGAACTAAATTCATCTGAGCTTCATATGATAAATAATTCCAAACTATATGAGAATGCTCGCATTTCTCCAATATCGCTTACATATTATGTGTACTGTATGGCAAATGGAAACTATACTATAAGCCTCCATTTTGCTGAAATTAGATTTACAAATGGTAAAACTTTTAGCAGCCTTGGAAGACGCATTTTTGATGTCTATGTGCAGGGGCGGCTGGTACTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAAACTGTAATAAAAAAGATTTTCACTGCTGTTACTAGTAATACCATAGAGATTCGTTTTTATTGGGCTGGAAAGGGGACATCTGCTATCCCTGTGGGTGGAGTCTATGGCCCTTTGATATCCGCCATTTCGATAGAACCGGTAGACTTCGAGCCTCCATCAAAAGGTCGAAGTCCCTTACGAGTAGGTGCAATACTTGGCATTGTGGCTGCAGTTGCCATTGTTATAGTTTCAATTCTTGGAATTCTATGGTGGAGAGGTTGCCAGCTTGGACGAAAAAGTACACTTCATCAAGATCTCAAAGGTCTAGATTTGCAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACAAATAACTTTGATGTTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTCTTGGATGGCACCATAATTGCAGTAAAGCAACTTTCCTCTAAGTCAAAGCAAGGAATGCACGAGTTTGTGAATGAGATAGGCATGATATCGGCTTTGCATCATCCACATCTAGTTAAGCTTTATGGATGTTGTGTTGAAGAAAGTCAACTTTTGGTAGTATATGAATATATGGAAAATAATAGCCTCGCTCAAGCTATGTTTGGACCTGAAGCAAGTCAATTGAAATTGGATTGGCCAACCAGGCAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCCTATCTTCATGAGGAATCGAGATTGAAGATTGTTCATAGAGATATCAAAGCAACTAATGTATTATTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCCAAACTTGAAGAAGAAGGAAATACTCACATAAGCACTCGAATTGCTGGAACTTTTGGCTATATTGCACCAGAGTATGCAATGCGAGGTTACTTAACTGATAAAGCAGATGTATACAGTTTTGGCATCGTGGCCTTGGAAATAGTTAGTGGAAGGAGTAATACTACTTATCGATCAAAAGACGACTGCTTTTATCTACTTGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGAGTCCAACTTCAACAAGAAAGAAGCAATGGGCATGATCAATATTGCTCTTCATTGCACAAATGTTTCTCCAACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGCTGGAAGGCAAGGTTGCTGTGAAGGAGTTGGTTTCACATCCAAATGAATCAAGAACAAAGATGGGTGAAATGTGGACCATTTTGGAGCAGAGCTTGAAACAAACTGACAATGAGAGTCAACTGGCAGACGAGATCTCTATGGACATGCCTTGTACCAATTCTTCAACATCAATGAGTTGA | 2532 | 39.57 | MSSSQFLAWKSAHGLHSTRDWKYHYSYNVGLGSQSSIGNFTFDTWEFVQLGNIVVLHRWILLASNNFTGQLPTALGKLTSLISLKIQASGLSGPLPSELGLLTKLIDLRISDLNGASSPFPPLNNLTNIRFLILRSCNIVGLLPDYLDGMQSLELLDLSFNKISGQIPTSFHSLDDVDNIFLTGNLLNGSVPEWMLLRGNSIDLSYNKFNPLSTGCQSRDTNLFASSALDNNSNLVSCLPDHICSDENQYSLHINCGGKEEVINGTKFEGDEDTGKPSVFVSSTKNWAFSNTGIFMEDSRLSFDYIELNSSELHMINNSKLYENARISPISLTYYVYCMANGNYTISLHFAEIRFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKTVIKKIFTAVTSNTIEIRFYWAGKGTSAIPVGGVYGPLISAISIEPVDFEPPSKGRSPLRVGAILGIVAAVAIVIVSILGILWWRGCQLGRKSTLHQDLKGLDLQTGSFTLRQIKAATNNFDVSNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGMHEFVNEIGMISALHHPHLVKLYGCCVEESQLLVVYEYMENNSLAQAMFGPEASQLKLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLESNFNKKEAMGMINIALHCTNVSPTERPTMSLVVAMLEGKVAVKELVSHPNESRTKMGEMWTILEQSLKQTDNESQLADEISMDMPCTNSSTSMS | 843 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38822568 | 38828908 | + | Maker00016367 | Lcy9g1387 | 642503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1387 | 843 | CDD | STKc_IRAK | 520 | 787 | - | - | |
Lcy9g1387 | 843 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 249 | 440 | - | - | |
Lcy9g1387 | 843 | Gene3D | Phosphorylase Kinase; domain 1 | 481 | 589 | - | - | |
Lcy9g1387 | 843 | SMART | serkin_6 | 514 | 785 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1387 | 843 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 636 | 648 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1387 | 843 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 61 | 799 | IPR051824 | - | |
Lcy9g1387 | 843 | Pfam | Protein tyrosine and serine/threonine kinase | 516 | 784 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1387 | 843 | Gene3D | - | 251 | 439 | - | - | |
Lcy9g1387 | 843 | Pfam | Leucine rich repeat | 128 | 187 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1387 | 843 | SUPERFAMILY | L domain-like | 59 | 223 | - | - | |
Lcy9g1387 | 843 | FunFam | probable LRR receptor-like serine/threonine-protein kinase At1g53430 | 483 | 589 | - | - | |
Lcy9g1387 | 843 | Gene3D | Transferase(Phosphotransferase) domain 1 | 590 | 820 | - | - | |
Lcy9g1387 | 843 | SUPERFAMILY | Protein kinase-like (PK-like) | 498 | 805 | IPR011009 | - | |
Lcy9g1387 | 843 | Gene3D | Ribonuclease Inhibitor | 42 | 250 | IPR032675 | - | |
Lcy9g1387 | 843 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 590 | 797 | - | - | |
Lcy9g1387 | 843 | ProSiteProfiles | Protein kinase domain profile. | 514 | 800 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1387 | 843 | Pfam | Malectin domain | 251 | 435 | IPR021720 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g1387 | Lcy-Chr9:38822568 | Lcy9g1396 | Lcy-Chr9:38975458 | 7.64e-313 | dispersed | |
Lcy9g1385 | Lcy-Chr9:38801635 | Lcy9g1387 | Lcy-Chr9:38822568 | 1.41e-310 | proximal | |
Lcy5g1992 | Lcy-Chr5:42891927 | Lcy9g1387 | Lcy-Chr9:38822568 | 4.06E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66198 | None | None | None | None | Lcy | PK |
Pathway information
