Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1387 ATGTCGTCGTCACAGTTCCTTGCTTGGAAATCGGCTCACGGGCTCCATTCCACACGAGATTGGAAATATCACTACTCTTACAACGTTGGTCTTGGAAGCCAATCATCTATCGGGAACTTTACCTTCGACACTTGGGAATTTGTTCAACTTGGAAATATTGTAGTTTTGCACCGTTGGATACTTCTTGCCTCCAATAACTTTACTGGACAGTTGCCGACAGCTCTAGGAAAGCTGACCTCGTTGATCTCATTAAAGATTCAAGCAAGTGGGTTGAGTGGGCCTCTTCCTTCTGAATTGGGACTTTTGACCAAATTAATCGACCTAAGAATCAGTGACTTGAACGGAGCTTCATCACCCTTTCCACCTCTAAATAATTTGACCAATATCAGATTTCTGATATTAAGAAGTTGCAATATCGTGGGATTATTGCCCGATTATCTAGATGGGATGCAATCTTTGGAACTCTTAGACCTCAGCTTTAACAAAATAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGATGATGTTGATAATATATTTTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAATGGATGTTGCTCAGAGGAAATAGCATTGATCTCTCTTACAATAAATTTAACCCACTATCTACAGGCTGCCAATCACGAGATACAAACCTATTTGCAAGCTCTGCATTGGACAATAATTCTAATCTTGTTTCTTGTTTGCCGGACCACATTTGTTCTGATGAGAATCAATATAGTCTCCATATAAATTGTGGTGGCAAAGAAGAAGTTATCAATGGTACAAAGTTCGAAGGAGATGAAGACACAGGCAAGCCGTCTGTGTTTGTCTCAAGCACAAAAAATTGGGCATTTAGCAACACTGGAATATTTATGGAGGATAGTCGTCTTTCATTCGACTATATTGAACTAAATTCATCTGAGCTTCATATGATAAATAATTCCAAACTATATGAGAATGCTCGCATTTCTCCAATATCGCTTACATATTATGTGTACTGTATGGCAAATGGAAACTATACTATAAGCCTCCATTTTGCTGAAATTAGATTTACAAATGGTAAAACTTTTAGCAGCCTTGGAAGACGCATTTTTGATGTCTATGTGCAGGGGCGGCTGGTACTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAAACTGTAATAAAAAAGATTTTCACTGCTGTTACTAGTAATACCATAGAGATTCGTTTTTATTGGGCTGGAAAGGGGACATCTGCTATCCCTGTGGGTGGAGTCTATGGCCCTTTGATATCCGCCATTTCGATAGAACCGGTAGACTTCGAGCCTCCATCAAAAGGTCGAAGTCCCTTACGAGTAGGTGCAATACTTGGCATTGTGGCTGCAGTTGCCATTGTTATAGTTTCAATTCTTGGAATTCTATGGTGGAGAGGTTGCCAGCTTGGACGAAAAAGTACACTTCATCAAGATCTCAAAGGTCTAGATTTGCAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACAAATAACTTTGATGTTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTCTTGGATGGCACCATAATTGCAGTAAAGCAACTTTCCTCTAAGTCAAAGCAAGGAATGCACGAGTTTGTGAATGAGATAGGCATGATATCGGCTTTGCATCATCCACATCTAGTTAAGCTTTATGGATGTTGTGTTGAAGAAAGTCAACTTTTGGTAGTATATGAATATATGGAAAATAATAGCCTCGCTCAAGCTATGTTTGGACCTGAAGCAAGTCAATTGAAATTGGATTGGCCAACCAGGCAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCCTATCTTCATGAGGAATCGAGATTGAAGATTGTTCATAGAGATATCAAAGCAACTAATGTATTATTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCCAAACTTGAAGAAGAAGGAAATACTCACATAAGCACTCGAATTGCTGGAACTTTTGGCTATATTGCACCAGAGTATGCAATGCGAGGTTACTTAACTGATAAAGCAGATGTATACAGTTTTGGCATCGTGGCCTTGGAAATAGTTAGTGGAAGGAGTAATACTACTTATCGATCAAAAGACGACTGCTTTTATCTACTTGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGAGTCCAACTTCAACAAGAAAGAAGCAATGGGCATGATCAATATTGCTCTTCATTGCACAAATGTTTCTCCAACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGCTGGAAGGCAAGGTTGCTGTGAAGGAGTTGGTTTCACATCCAAATGAATCAAGAACAAAGATGGGTGAAATGTGGACCATTTTGGAGCAGAGCTTGAAACAAACTGACAATGAGAGTCAACTGGCAGACGAGATCTCTATGGACATGCCTTGTACCAATTCTTCAACATCAATGAGTTGA 2532 39.57 MSSSQFLAWKSAHGLHSTRDWKYHYSYNVGLGSQSSIGNFTFDTWEFVQLGNIVVLHRWILLASNNFTGQLPTALGKLTSLISLKIQASGLSGPLPSELGLLTKLIDLRISDLNGASSPFPPLNNLTNIRFLILRSCNIVGLLPDYLDGMQSLELLDLSFNKISGQIPTSFHSLDDVDNIFLTGNLLNGSVPEWMLLRGNSIDLSYNKFNPLSTGCQSRDTNLFASSALDNNSNLVSCLPDHICSDENQYSLHINCGGKEEVINGTKFEGDEDTGKPSVFVSSTKNWAFSNTGIFMEDSRLSFDYIELNSSELHMINNSKLYENARISPISLTYYVYCMANGNYTISLHFAEIRFTNGKTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKTVIKKIFTAVTSNTIEIRFYWAGKGTSAIPVGGVYGPLISAISIEPVDFEPPSKGRSPLRVGAILGIVAAVAIVIVSILGILWWRGCQLGRKSTLHQDLKGLDLQTGSFTLRQIKAATNNFDVSNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGMHEFVNEIGMISALHHPHLVKLYGCCVEESQLLVVYEYMENNSLAQAMFGPEASQLKLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDCFYLLDWALELKEKDSLMELVDPRLESNFNKKEAMGMINIALHCTNVSPTERPTMSLVVAMLEGKVAVKELVSHPNESRTKMGEMWTILEQSLKQTDNESQLADEISMDMPCTNSSTSMS 843
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 38822568 38828908 + Maker00016367 Lcy9g1387 642503
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1387 843 CDD STKc_IRAK 520 787 - -
Lcy9g1387 843 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 249 440 - -
Lcy9g1387 843 Gene3D Phosphorylase Kinase; domain 1 481 589 - -
Lcy9g1387 843 SMART serkin_6 514 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1387 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1387 843 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 61 799 IPR051824 -
Lcy9g1387 843 Pfam Protein tyrosine and serine/threonine kinase 516 784 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1387 843 Gene3D - 251 439 - -
Lcy9g1387 843 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Lcy9g1387 843 SUPERFAMILY L domain-like 59 223 - -
Lcy9g1387 843 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 483 589 - -
Lcy9g1387 843 Gene3D Transferase(Phosphotransferase) domain 1 590 820 - -
Lcy9g1387 843 SUPERFAMILY Protein kinase-like (PK-like) 498 805 IPR011009 -
Lcy9g1387 843 Gene3D Ribonuclease Inhibitor 42 250 IPR032675 -
Lcy9g1387 843 FunFam Putative LRR receptor-like serine/threonine-protein kinase 590 797 - -
Lcy9g1387 843 ProSiteProfiles Protein kinase domain profile. 514 800 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1387 843 Pfam Malectin domain 251 435 IPR021720 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1387 Lcy-Chr9:38822568 Lcy9g1396 Lcy-Chr9:38975458 7.64e-313 dispersed
Lcy9g1385 Lcy-Chr9:38801635 Lcy9g1387 Lcy-Chr9:38822568 1.41e-310 proximal
Lcy5g1992 Lcy-Chr5:42891927 Lcy9g1387 Lcy-Chr9:38822568 4.06E-51 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66198 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1387 - - - 0.0