Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1390 | ATGAGACAACAAATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTCCATGAGGAGTCAGGATTGAAGATTGTTCACCGAGACATCAAAGGTACTAATATATTGTTAGATAAAAATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGTTTGATGAAGAAGAGAATACCCACATGACCACTCGGATCGCCGGAACATTTGGATATATGGCACCAGAATATGCTACACGAGGCCACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTGGAAATAGTTAGTGGAAGGAGCAACACTATCTATCGGTCAAAGGATAAGTGTCTTTATCTTCTCGATTGGGCACTTGTGGTGAAAGAGAAAGGAAATTTAATGGAACTAGTTGATCCAAGGTTAGGCTCCAATTTCGACCAGGGCGAGGCAATGGCAATGATCAACATTGCTCTCCTCTGCACCAATGTCTCTCCTTCGGCGAGACCCACCATGTCCTCAGTAGTGAGCATGATGCTGGAAGGTAAGGCTGCTGTCGAGGAATTGGATACAAATCCAAATGACTTACGAGAAGAGATGAACGCACTGTGGACCCTCATGCAGCAGAACCATAAAATGATTGACAACGACAACCAAACAGAGAGTGCATCATCTATGGACATGCCGTGTACCAGTTCTTCCACATCGATAAAGAGTAGAAACTAG | 708 | 42.8 | MRQQICIGIAKGLAFLHEESGLKIVHRDIKGTNILLDKNLNPKISDFGLAKFDEEENTHMTTRIAGTFGYMAPEYATRGHLTDKADVYSFGIVALEIVSGRSNTIYRSKDKCLYLLDWALVVKEKGNLMELVDPRLGSNFDQGEAMAMINIALLCTNVSPSARPTMSSVVSMMLEGKAAVEELDTNPNDLREEMNALWTLMQQNHKMIDNDNQTESASSMDMPCTSSSTSIKSRN | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38899451 | 38901192 | + | Maker00016714 | Lcy9g1390 | 642506 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1390 | 235 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 176 | IPR011009 | - | |
| Lcy9g1390 | 235 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 1 | 216 | IPR052059 | GO:0004674(PANTHER)|GO:0006468(PANTHER) | |
| Lcy9g1390 | 235 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 213 | - | - | |
| Lcy9g1390 | 235 | SMART | serkin_6 | 1 | 173 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1390 | 235 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 24 | 36 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1390 | 235 | ProSiteProfiles | Protein kinase domain profile. | 1 | 175 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1390 | 235 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 1 | 186 | - | - | |
| Lcy9g1390 | 235 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
| Lcy9g1390 | 235 | Pfam | Protein kinase domain | 4 | 171 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1390 | Lcy-Chr9:38899451 | Lcy9g1394 | Lcy-Chr9:38961753 | 9.61E-124 | dispersed | |
| Lcy9g1390 | Lcy-Chr9:38899451 | Lcy9g1392 | Lcy-Chr9:38928900 | 1.17E-123 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66199 | None | None | None | None | Lcy | PK |
Pathway information