Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1392 ATGCTGACCAATCTGACCTACTTACATATTCAAGCAAGTGGGTTGAGTGGGCCTATTCCGTCTGAAATCAGATTTTTGACAACATTAACCGACTTAGACCTCAGCTTTAACAAAATAAGTGGGCAGATTCCTCCCAGTTTTCATAGTCTTGAAGTAACCATTGATGGAGTCAAGTTTGAAGGAGATGAAGAGAGGGTCAATTCATCACAGTTTTTCTCAAGTAATACAAATTGGGCATTGAGCAATACTGGCGTTTTTATGGATTATTATAATCTCACTACAAATGACTACATTATTGCTAAAAATTCATCTGCGTTGTCTATGACAAATTCCACATTGTATGAGACTGCTCGAATTTCTCCACTGTCTCTTACATACTATGTGTATTGCATGGCAATTGGAAACTACACAATAAGACTCCATTTTGCAGAAATAATGTTTACCAATGATAAAAACTATGGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAAGCGAGTGCTGAAGGACTTTAATATTGCAGAAGCTGCAGGTGGTGTAGGTAAAGCTGTCATAAAAAACATTTCCGTTGCTATTAGTAGTAGTGGTACTTTGGAGATACGATTTTATTGGGCTGGCAAAGGGACAACTTATATCCCTACCTACGGAGTCTATGGTCCTTTGATTTCTGCGATTTTAGTAGATCCTGTTTCTCGATCAGAAGGTCAAAATACATTACCTGTAGGTGCAGTTGTTGGAAATTTGAAGGGTCAGAATCTGCCAATTGGTTCATTTACATTAAAGCAAATCACAACTGCAACAAATAATTTTGACACTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGCATTCTTATGGATGGTACCATGATTGCAGTGAAGCAACTTTCTACAAAGTCGAAGCAAGGAAACCGTGAATTTGTGAATGAAATAGGCTTGATATCCTCTTTGAATCACCCAAATCTAGTTAAGCTTTATGGATGTTGTACTGAAGCAGACCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCGAGCCCTCTTTGGACCTCAAGGATGTCGATTAAAATTGGATTGGGCAACAAGGCAAAAGATTTGCATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCAAGATTGAAGATTGTTCACCGAGATATCAAAGGTACTAATGTATTGTTAGATAAGAATCTCAACCCAAAGATATCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACATTTGGGTATATGGCACCAGAATATGCAACACGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTGGCATTGGAAATAGTTAGTGGAAGGAGCAACACTATGTACCGAGGAAAGGATAAATGTCTTTATCTTCTCGATTGGGCACTTGTATTGAAAGAGAAAGGGAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGGTCCAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCGGCGAGACCTACCATGTCCTCCGTGGTGAGCATGTTGGAAGGTAAGGTTCCTATCAAGGAGTTGGTTGCAGATCCAGATCCAGATGACATGGTAAAAGAGATGAGCGAAATGTGGAGCCTTATTCAACAAAACGAGATAATACCCGACGATGAGAACAAGATTGAGACTGCATCGTTTCTAGAGATACAATCAACCAGTTCTTCGACATCGATGAAGAGTAGAAACTAG 1824 39.42 MLTNLTYLHIQASGLSGPIPSEIRFLTTLTDLDLSFNKISGQIPPSFHSLEVTIDGVKFEGDEERVNSSQFFSSNTNWALSNTGVFMDYYNLTTNDYIIAKNSSALSMTNSTLYETARISPLSLTYYVYCMAIGNYTIRLHFAEIMFTNDKNYGSLGRRIFDVYVQGKRVLKDFNIAEAAGGVGKAVIKNISVAISSSGTLEIRFYWAGKGTTYIPTYGVYGPLISAILVDPVSRSEGQNTLPVGAVVGNLKGQNLPIGSFTLKQITTATNNFDTSNKIGEGGFGPVYKGILMDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPNLVKLYGCCTEADQLLLVYEYMENNSLARALFGPQGCRLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMYRGKDKCLYLLDWALVLKEKGSLMELVDPKLGSSFDQEEAMAMINIAFLCTNVSPSARPTMSSVVSMLEGKVPIKELVADPDPDDMVKEMSEMWSLIQQNEIIPDDENKIETASFLEIQSTSSSTSMKSRN 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38928900 38935345 + Maker00016815 Lcy9g1392 642508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1392 607 Gene3D Ribonuclease Inhibitor 1 50 IPR032675 -
Lcy9g1392 607 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 246 348 - -
Lcy9g1392 607 Gene3D - 51 232 - -
Lcy9g1392 607 FunFam Putative LRR receptor-like serine/threonine-protein kinase 349 556 - -
Lcy9g1392 607 Gene3D Phosphorylase Kinase; domain 1 247 348 - -
Lcy9g1392 607 Pfam Protein kinase domain 274 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1392 607 ProSiteProfiles Protein kinase domain profile. 273 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1392 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1392 607 SUPERFAMILY L domain-like 2 50 - -
Lcy9g1392 607 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 560 IPR051824 -
Lcy9g1392 607 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 48 233 - -
Lcy9g1392 607 Pfam Malectin domain 53 228 IPR021720 -
Lcy9g1392 607 Pfam Leucine Rich Repeat 29 50 IPR001611 GO:0005515(InterPro)
Lcy9g1392 607 SMART serkin_6 273 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1392 607 Gene3D Transferase(Phosphotransferase) domain 1 349 556 - -
Lcy9g1392 607 CDD STKc_IRAK 279 546 - -
Lcy9g1392 607 SUPERFAMILY Protein kinase-like (PK-like) 257 545 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2551 Lcy-Chr1:46483928 Lcy9g1392 Lcy-Chr9:38928900 1.11E-219 dispersed
Lcy6g1627 Lcy-Chr6:29573455 Lcy9g1392 Lcy-Chr9:38928900 5.12E-152 dispersed
Lcy9g0416 Lcy-Chr9:11658724 Lcy9g1392 Lcy-Chr9:38928900 0 dispersed
Lcy9g1392 Lcy-Chr9:38928900 Lcy9g1394 Lcy-Chr9:38961753 3.01E-247 dispersed
Lcy9g1390 Lcy-Chr9:38899451 Lcy9g1392 Lcy-Chr9:38928900 1.17E-123 proximal
Lcy9g1392 Lcy-Chr9:38928900 Lcy9g1393 Lcy-Chr9:38936349 8.19E-23 tandem
Lcy5g1899 Lcy-Chr5:41808317 Lcy9g1392 Lcy-Chr9:38928900 1.88E-64 transposed
Lcy5g1994 Lcy-Chr5:42924968 Lcy9g1392 Lcy-Chr9:38928900 5.21E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66200 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1392 - - - 0.0