Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1394 GACAACTTCATTGGTTTTGACTATTTTTTCAAACCTGCGACTTGTACAGATCTAAAGGGTCAAAATCTGCCCATTGCCGGTTCATTTACATTAAAGCAAATCACAACCGCAACAAATAACTTCAACACTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGCATTCTTATGGATGGTACGATGATTGCAGTGAAGCAACTTTCTACGAAGTCAAAGCAAGGAAACCGTGAATTTGTGAATGAAATAGGCTTGATATCCTCTTTGAATCACCCAAATCTAGTTAAGCTTTATGGATGTTGTACCGAAGCAAACCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTCGGACCTCAAGGATGTCGATTAAAATTGGATTGGGCAACAAGGCAAAAGATTTGCATTGGTATAGCCAAAGGTTTGGCTTTTCTTCATGAGGAGTCAAGATTGAAGATAGTTCACCGAGATATCAAAGGTTCTAATGTATTGTTAGATAAAGATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCAGGAACACTTGGGTATATGGCACCAGAATATGCAACACGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTGGAAATAGTTAGTGGGAGGAGCAATACTATGTATCGAGGAAAGGATAAGTGTCTTTATCTTCTTGATTGGGCACTTGTATTGAAAGAGAAAGGGAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGGTCCAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCGGTGAGACCTACCATGTCCTCCGTGGTGAGCATGTTGGAAGGTAAGGTTCCTATCAAGGAGTTGGTTTCAGATCCAGATCCAGATGACATGGTAAAAGAGATGAGCGAAATGTGGAGCCTTATTCAACAAAACGAGATAATACCCGACGATGAGGACAAGATTGAGACTGCATCGTTTCTAGAGATGCAATCAACCAGTTCTTCAACATCGATGAAGAGTAGAAACTAG 1128 40.16 DNFIGFDYFFKPATCTDLKGQNLPIAGSFTLKQITTATNNFNTSNKIGEGGFGPVYKGILMDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPNLVKLYGCCTEANQLLLVYEYMENNSLAQALFGPQGCRLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGSNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTLGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMYRGKDKCLYLLDWALVLKEKGSLMELVDPKLGSSFDQEEAMAMINIAFLCTNVSPSVRPTMSSVVSMLEGKVPIKELVSDPDPDDMVKEMSEMWSLIQQNEIIPDDEDKIETASFLEMQSTSSSTSMKSRN 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38961753 38963807 + Maker00016717 Lcy9g1394 642510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1394 375 Pfam Protein kinase domain 42 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1394 375 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 11 116 - -
Lcy9g1394 375 SMART serkin_6 41 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1394 375 FunFam Putative LRR receptor-like serine/threonine-protein kinase 117 324 - -
Lcy9g1394 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1394 375 SUPERFAMILY Protein kinase-like (PK-like) 27 313 IPR011009 -
Lcy9g1394 375 Gene3D Phosphorylase Kinase; domain 1 14 116 - -
Lcy9g1394 375 CDD STKc_IRAK 47 314 - -
Lcy9g1394 375 Gene3D Transferase(Phosphotransferase) domain 1 117 338 - -
Lcy9g1394 375 ProSiteProfiles Protein kinase domain profile. 41 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1394 375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 330 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1390 Lcy-Chr9:38899451 Lcy9g1394 Lcy-Chr9:38961753 9.61E-124 dispersed
Lcy9g1392 Lcy-Chr9:38928900 Lcy9g1394 Lcy-Chr9:38961753 3.01E-247 dispersed
Lcy9g1394 Lcy-Chr9:38961753 Lcy5g1955 Lcy-Chr5:42395034 6.86E-82 dispersed
Lcy9g1394 Lcy-Chr9:38961753 Lcy9g1396 Lcy-Chr9:38975458 1.13E-156 proximal
Lcy9g1393 Lcy-Chr9:38936349 Lcy9g1394 Lcy-Chr9:38961753 1.07E-22 tandem
Lcy9g1394 Lcy-Chr9:38961753 Lcy9g1395 Lcy-Chr9:38969802 1.25E-11 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66201 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1394 - - - 0.0