Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1396 ATGTTCCTGTCTAGAATCCTCTTCATTTCTTTCATTGGTTTCTTCTCCTTCATGGTTGGAATTCATTCTCAGTCCACTAGATTGCCTGCAGAAGAAGTGGAAGCTTTACAGGAAATAGGAAAGGTTTTGGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAGTGGAGACCATGGATGGATTTCTCAACCCAACCAAATCCCCAAGAATGTTTCTGGCTTTGAAAATAATCTCACCTGTGATTGCACCTTTCTCAATGCCACAGTCTGCCATGTCATCAGCATAGTTCTCAAATCGCAGAGCCTTCAAGGCACTCTCCCGCCCCATCTTGTCCGATTGCCCTTTCTGCAGCAAATTTCCCTTCTTGGAAATCGGTTGACGGGTTTGATCCCAGAGGAGATTGGAAACATCACTACTCTGGAGAATCTACATCTTACCTCAAACAACTTTTCTGGAGAGTTGCCAACGTCACTCGGAAAGTTGACCACATTGAAGGAATTTCGAATTGGTGACAATAACTTCTCGGGCCCAATACCGAATTTCATACGTAACTGGACAGATCTTACTGAATTGCTCATTCAGGCAAGTGGATTGAGTGGGCCCATTCCTTCTGACATTGGACTATTGACAAAGTTATCTGACTTGAGAATCAGTGACTTGAGTGGAGCTTCATCACCCTTTCCACCTCTTAGTAATTTGGAAGACATGACAATTCTGATATTGAGAAGTTGCAACATCACTGGAAGGCTGCCCAACTATCTGGATAGGATGCCATCCTTAAAAATCTTAGATCTCAGCTTCAACAAACTAAGTGGACGAATTCCGACCAGATTCAATGCTCTTAAAGGGTTGGATAACATATTTTTAACTGGAAACATGCTGAATGGATCAGTGCCTGATTGGATGTTGAAAGGAAATGGGATTGATCTTTCCTATAATAATTTTACAGTCAGGGTTGCTGGGGAAAGTTGTCGGTCCCAAAAAGTGAACCTTTTTGCAAGCTCTTCACAAGACAATGATTATGGAATTCTTTCATGTTTAGCAGGCTCGTCCTGTTCAAAATCTTGGTACTCTCTTCATATAAATTGTGGTGGAAAGGAACAAACCATAAATGGAACTACAGTTTTTAAAGGAGACCGAAATACAGGCAGCTCTATGTTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACCGGTAGCTTTTTGGATGATGGTAGCTCTCAAGATGAATACACTGCAACAAATTCTTCTACTCTTTCTATGACAAATCCTGAACTGTACATGACTGCACGCATTTCTCCATTATCTGTTACTTACTATGGGTTTTGTATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATCATGTTTACTGATGACAAGTCATTCAGTAGTCTTGGCAGACGAATATTTGATGTTTATATTCAGAAAAAGCTGGTGCTAGAGGATTTCAATATAGTGGATGCAGCAGGTGGCGTTGGTAAAGCAGTCATAAAAAAAATCCCAGTTACTGTGACGAATGGTACATTGGAGATTCGCTTCTATTGGGCCGGGAAGGGGACAAATGCTATCCCGGTGAGGGGAGTTTATGGTCCTCTTATATCTGCTATATCTGTAGATCCTGACTTTGAGCCTCCAGCAGAGGGCGGAGGAACTGGAAAGTCTGGCATATCTGTAGGTGCAGTGATAGGTATTGCAGCTGCTGCAATTTTTGTTATATTATTGGCTCTCGGAATCCTGTGGTGGAGCATATGTCTACGACGGGAAAAGACACTTGAACAAGAGTTACGAGGTTTGGATTTGCAAACTTGTTCTTTTACATTAAGGCAAATAAAAGCTGCCACAAATAATTTTGACGCTGCCAATAAGATTGGAGAAGGTGGTTTCGGTCCTGTCTATAAGGGCGTTCTTGCGGATGGCACAGCGATTGCAGTAAAGCAACTATCTTCAAAATCAAAGCAAGGAAATCGTGAGTTCGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGTTAGTATATGAATACATGGAAAACAATAGTCTTGCCCATGCCTTGTTTGGTCAAGAAGAAAGCGAACTAGAATTGGATTGGTCAACAAGGCATAAGATCTGTGTTGGTATAGCAAGAGGTTTGGCTTATCTTCATGAAGAATCAAGACTAAAGATTGTCCACAGAGACATCAAAGCTACTAATGTTCTATTAGACAAAGATCTAAACCCCAAGATATCTGATTTCGGCTTGGCCAAGCTTGATGAAGAAGGAAATACCCACATAAGCACTCGGATCGCTGGAACTTTGGGATACATGGCACCAGAATATGCAATGCGAGGACACTTAACTGATAAGGCTGATGTTTATAGCTTTGGTGTTGTGGCTTTAGAAATAGTTAGTGGAAGGAGCAACACTACTTTCTGGGCAGATAACGACTCCTCTTATCTTCTAGACTCGGCACTGAAGTTGAAAGAGAAGAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAACTTCAACAAGCGAGAGGCATTGAGAATGATCAAAATTGCTCTCCACTGCACTAATGGCTCTCCTGCAGCAAGACCTAACATGTCATCAGTAGTGAGCATGCTAGAAGGAAAGCAGGCCATTGAGGACATAGTGTCAGATTCAAGTGTCACTCAAGAAGCAATAAATGCAGCATGGACTCATTTGTTGCACGACGCCGAGCGATCTAATAATGAGAGCCAGAAGTATCGTTTGTTTGCTGATGTCTCGGCAACAGGTTCTTCAACATCTGCAAGCGATCTCTATCCAATCAACATATCTCAGTACTTGAATATTAGAGATACTAGACTATGA 2910 41.72 MFLSRILFISFIGFFSFMVGIHSQSTRLPAEEVEALQEIGKVLGKRDWNFSADPCSGDHGWISQPNQIPKNVSGFENNLTCDCTFLNATVCHVISIVLKSQSLQGTLPPHLVRLPFLQQISLLGNRLTGLIPEEIGNITTLENLHLTSNNFSGELPTSLGKLTTLKEFRIGDNNFSGPIPNFIRNWTDLTELLIQASGLSGPIPSDIGLLTKLSDLRISDLSGASSPFPPLSNLEDMTILILRSCNITGRLPNYLDRMPSLKILDLSFNKLSGRIPTRFNALKGLDNIFLTGNMLNGSVPDWMLKGNGIDLSYNNFTVRVAGESCRSQKVNLFASSSQDNDYGILSCLAGSSCSKSWYSLHINCGGKEQTINGTTVFKGDRNTGSSMFFVTGTNWAISNTGSFLDDGSSQDEYTATNSSTLSMTNPELYMTARISPLSVTYYGFCMGNGNYTVSLHFAEIMFTDDKSFSSLGRRIFDVYIQKKLVLEDFNIVDAAGGVGKAVIKKIPVTVTNGTLEIRFYWAGKGTNAIPVRGVYGPLISAISVDPDFEPPAEGGGTGKSGISVGAVIGIAAAAIFVILLALGILWWSICLRREKTLEQELRGLDLQTCSFTLRQIKAATNNFDAANKIGEGGFGPVYKGVLADGTAIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLAHALFGQEESELELDWSTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGNTHISTRIAGTLGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTTFWADNDSSYLLDSALKLKEKNSLMELVDPRLGSNFNKREALRMIKIALHCTNGSPAARPNMSSVVSMLEGKQAIEDIVSDSSVTQEAINAAWTHLLHDAERSNNESQKYRLFADVSATGSSTSASDLYPINISQYLNIRDTRL 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38975458 38985059 + Maker00016666 Lcy9g1396 642512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1396 969 ProSiteProfiles Protein kinase domain profile. 623 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1396 969 CDD STKc_IRAK 629 896 - -
Lcy9g1396 969 Gene3D - 361 546 - -
Lcy9g1396 969 SUPERFAMILY Protein kinase-like (PK-like) 608 896 IPR011009 -
Lcy9g1396 969 Gene3D Phosphorylase Kinase; domain 1 588 698 - -
Lcy9g1396 969 FunFam Leucine-rich repeat receptor protein kinase EMS1 107 206 - -
Lcy9g1396 969 Gene3D Ribonuclease Inhibitor 213 360 IPR032675 -
Lcy9g1396 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 907 IPR051824 -
Lcy9g1396 969 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 357 547 - -
Lcy9g1396 969 SMART serkin_6 623 894 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1396 969 Pfam Malectin domain 359 542 IPR021720 -
Lcy9g1396 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase 699 906 - -
Lcy9g1396 969 Pfam Protein tyrosine and serine/threonine kinase 626 894 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1396 969 Gene3D Ribonuclease Inhibitor 49 212 IPR032675 -
Lcy9g1396 969 SUPERFAMILY L domain-like 76 319 - -
Lcy9g1396 969 Gene3D Transferase(Phosphotransferase) domain 1 699 915 - -
Lcy9g1396 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1396 969 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lcy9g1396 969 Pfam Leucine Rich Repeat 260 280 IPR001611 GO:0005515(InterPro)
Lcy9g1396 969 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 592 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0065 Lcy-Chr4:973195 Lcy9g1396 Lcy-Chr9:38975458 6.31E-163 dispersed
Lcy9g1379 Lcy-Chr9:38682722 Lcy9g1396 Lcy-Chr9:38975458 6.20E-209 dispersed
Lcy9g1384 Lcy-Chr9:38787834 Lcy9g1396 Lcy-Chr9:38975458 0 dispersed
Lcy9g1385 Lcy-Chr9:38801635 Lcy9g1396 Lcy-Chr9:38975458 0 dispersed
Lcy9g1387 Lcy-Chr9:38822568 Lcy9g1396 Lcy-Chr9:38975458 7.64e-313 dispersed
Lcy9g1396 Lcy-Chr9:38975458 Lcy5g1955 Lcy-Chr5:42395034 2.69E-80 dispersed
Lcy9g1394 Lcy-Chr9:38961753 Lcy9g1396 Lcy-Chr9:38975458 1.13E-156 proximal
Lcy1g1380 Lcy-Chr1:13367297 Lcy9g1396 Lcy-Chr9:38975458 2.74E-91 transposed
Lcy5g1798 Lcy-Chr5:40718351 Lcy9g1396 Lcy-Chr9:38975458 6.12E-224 transposed
Lcy5g1899 Lcy-Chr5:41808317 Lcy9g1396 Lcy-Chr9:38975458 1.01E-62 transposed
Lcy6g0701 Lcy-Chr6:6834561 Lcy9g1396 Lcy-Chr9:38975458 5.62E-109 transposed
Lcy4g0747 Lcy-Chr4:8988227 Lcy9g1396 Lcy-Chr9:38975458 1.25E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66202 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1396 - - - 0.0