Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1399 ATGCCTGGGAATAAGTATAACGGTAATTCAAACGATATTTCAGACCACATTCCAGGTCGACTGGAAAGGCTCTTGCGAGAGAGAAAGCTAAGAAAAAGCAGTAAGGATTCATATTCAAACGAGGTAATCGACTATAGTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTGGAAAGAAGAAGAAAACGTTGGAATTCCCTGTAAATTTTCGGAAGCTTCGGTAGCCTCAAGGCCCTTTGGCGAAGGATGTGACAAGCAAGATGGCAAGCCTCCCAGACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTCAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATGAGTGCTGGAGGTCTAGTGAGTGCACTACTGGGTGTGAATGAATTTGAAACGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGGTAGGACAAAAGGCACTGAGTGAAGCTTTGGCTGAAAAGTTGCCGGTTTTCAGTTTTGTTTCAGTTGCCACTTGCCAGTTTCCAGTTTTACACCCCTCACCTCTGAATTCTTGCTACTTGCAGAGGTGTATCCCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAAGCAAACGAAATGTTTGCTGATGTAGTTACCAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGTCTCAAAGAGCGTAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCATCCCGATCAGAGCTTCTACGCTCAGTACTTGCGGCTGATCTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCAGATCGATTCATCCGTGCCCTCAAGATTCCTGAAGTCCAAGAACATATTGAAGAGTTAAAAGAAAGATTCAAAGGTCGAAAGGTAATGTTAGGTGTAGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCCTGGAGGAAAACCCTTATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATGTATGGTGCTTTCTCTACACGTTTTGTATTTTGATGTGCTTGTGCAGTACCAAAAACTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTGCTGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCACGCATTATGTGCACTATATGCTGTAACTGGTATTAATTTTCATTCTCCATCTACCGAATATGTAGCGCTTGTCACATCTTTGAGGGATGGAATGAACCTTGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGATTTCTTCAGATATGTGCGTTATGAGAATTGAACTTCCTGTGTAG 1689 42.63 MPGNKYNGNSNDISDHIPGRLERLLRERKLRKSSKDSYSNEVIDYSKESELIENDLRWKEEENVGIPCKFSEASVASRPFGEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEMSAGGLVSALLGVNEFETRWIGWAGVNVPDEVGQKALSEALAEKLPVFSFVSVATCQFPVLHPSPLNSCYLQRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANEMFADVVTKHYEEGDVVWCHDYHLMFLPKCLKERNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQEHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPECMVLSLHVLYFDVLVQYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTGINFHSPSTEYVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEISSDMCVMRIELPV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39008513 39022761 + Maker00016226 Lcy9g1399 642515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1399 562 Gene3D Glycogen Phosphorylase B; 87 369 - -
Lcy9g1399 562 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 552 - -
Lcy9g1399 562 Gene3D Glycogen Phosphorylase B; 370 559 - -
Lcy9g1399 562 CDD GT20_TPS 95 548 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy9g1399 562 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 184 369 - -
Lcy9g1399 562 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 87 549 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy9g1399 562 Pfam Glycosyltransferase family 20 95 550 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1559 Lcy-Chr8:42226385 Lcy9g1399 Lcy-Chr9:39008513 3.38E-52 dispersed
Lcy5g1792 Lcy-Chr5:40640939 Lcy9g1399 Lcy-Chr9:39008513 1.07E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1399 K16055 - csv:101204478 915.605