Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1400 | ATGCTAGGCCACAGCGTCGAGACGTTAGGCCTCGGGTTGATGGCATTTTGTAGCGTCTTGACGCTTCCTTCTCGAGTTTTTGGCTTGGAATTGAAAACAAAGTTTGCTGGTGCTGCACAATCTCTGGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAATAGAAGTCACAAAATCAATTGATCGAGCATTAAATATGAGTGCTGATGAAAGAGAAAAGCGACATAGGCATAATTTTCTCCATGTGACAACACACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATAAGACAATCTCCACCCCTGCTTCCATCTGACGATGCAGTTAAACGTTATGACCAATCGACTAATCGATTACTTATATTGGGCTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCGGATTTGAAAGAACCATTGACAGCAATTTGCAACGATCCAAATACGACAGTAGTTATCCTCAGTGGGAGTGACAGAACTGTCTTGGACGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTTACAAGAGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTACAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGGTCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTCGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCGTCAGATACCATAGGCATGGCAAGAGCCAAGGGAACCGACGGACTTAAGTTAACTGGTGAGAGAAGATCTTCCATTAAAGTTCCTGTAAATAGGAATGGATCAAAATCGCCTCACAATAAGGCGCGGTCAAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAATGGTCGTAAACCATCACCAGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCGTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCGGACGATGTCGTTACATTCCTTAAGGAGTTGGCAAGTGCAAACGCGTCTTCTTGA | 1407 | 44.42 | MLGHSVETLGLGLMAFCSVLTLPSRVFGLELKTKFAGAAQSLGAGALLVNPWNIIEVTKSIDRALNMSADEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQSPPLLPSDDAVKRYDQSTNRLLILGFNSTLTEPVDTPERRGDQIREMELKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRSSIKVPVNRNGSKSPHNKARSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKELASANASS | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39029629 | 39033975 | + | Maker00016942 | Lcy9g1400 | 642516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1400 | 468 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 225 | 305 | - | - | |
Lcy9g1400 | 468 | MobiDBLite | consensus disorder prediction | 382 | 416 | - | - | |
Lcy9g1400 | 468 | Gene3D | Glycogen Phosphorylase B; | 34 | 85 | - | - | |
Lcy9g1400 | 468 | FunFam | Trehalose-6-phosphatase synthase S4 | 271 | 385 | - | - | |
Lcy9g1400 | 468 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 159 | 230 | - | - | |
Lcy9g1400 | 468 | Pfam | Trehalose-phosphatase | 158 | 365 | IPR003337 | GO:0005992(InterPro) | |
Lcy9g1400 | 468 | Gene3D | - | 225 | 305 | - | - | |
Lcy9g1400 | 468 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 28 | 103 | - | - | |
Lcy9g1400 | 468 | CDD | HAD_TPP | 133 | 353 | - | - | |
Lcy9g1400 | 468 | Pfam | Glycosyltransferase family 20 | 34 | 100 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lcy9g1400 | 468 | Gene3D | Glycogen Phosphorylase B; | 86 | 97 | - | - | |
Lcy9g1400 | 468 | SUPERFAMILY | HAD-like | 132 | 462 | IPR036412 | - | |
Lcy9g1400 | 468 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 34 | 464 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Lcy9g1400 | 468 | Gene3D | - | 159 | 319 | IPR023214 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g1400 | Lcy-Chr9:39029629 | Lcy5g1792 | Lcy-Chr5:40640939 | 6.17E-206 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1400 | K16055 | - | csv:101204478 | 835.484 |