Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1400 ATGCTAGGCCACAGCGTCGAGACGTTAGGCCTCGGGTTGATGGCATTTTGTAGCGTCTTGACGCTTCCTTCTCGAGTTTTTGGCTTGGAATTGAAAACAAAGTTTGCTGGTGCTGCACAATCTCTGGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAATAGAAGTCACAAAATCAATTGATCGAGCATTAAATATGAGTGCTGATGAAAGAGAAAAGCGACATAGGCATAATTTTCTCCATGTGACAACACACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATAAGACAATCTCCACCCCTGCTTCCATCTGACGATGCAGTTAAACGTTATGACCAATCGACTAATCGATTACTTATATTGGGCTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCGGATTTGAAAGAACCATTGACAGCAATTTGCAACGATCCAAATACGACAGTAGTTATCCTCAGTGGGAGTGACAGAACTGTCTTGGACGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTTACAAGAGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTACAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGGTCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTCGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCGTCAGATACCATAGGCATGGCAAGAGCCAAGGGAACCGACGGACTTAAGTTAACTGGTGAGAGAAGATCTTCCATTAAAGTTCCTGTAAATAGGAATGGATCAAAATCGCCTCACAATAAGGCGCGGTCAAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAATGGTCGTAAACCATCACCAGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCGTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCGGACGATGTCGTTACATTCCTTAAGGAGTTGGCAAGTGCAAACGCGTCTTCTTGA 1407 44.42 MLGHSVETLGLGLMAFCSVLTLPSRVFGLELKTKFAGAAQSLGAGALLVNPWNIIEVTKSIDRALNMSADEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQSPPLLPSDDAVKRYDQSTNRLLILGFNSTLTEPVDTPERRGDQIREMELKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRSSIKVPVNRNGSKSPHNKARSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKELASANASS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39029629 39033975 + Maker00016942 Lcy9g1400 642516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1400 468 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 225 305 - -
Lcy9g1400 468 MobiDBLite consensus disorder prediction 382 416 - -
Lcy9g1400 468 Gene3D Glycogen Phosphorylase B; 34 85 - -
Lcy9g1400 468 FunFam Trehalose-6-phosphatase synthase S4 271 385 - -
Lcy9g1400 468 FunFam Alpha,alpha-trehalose-phosphate synthase 159 230 - -
Lcy9g1400 468 Pfam Trehalose-phosphatase 158 365 IPR003337 GO:0005992(InterPro)
Lcy9g1400 468 Gene3D - 225 305 - -
Lcy9g1400 468 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 28 103 - -
Lcy9g1400 468 CDD HAD_TPP 133 353 - -
Lcy9g1400 468 Pfam Glycosyltransferase family 20 34 100 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy9g1400 468 Gene3D Glycogen Phosphorylase B; 86 97 - -
Lcy9g1400 468 SUPERFAMILY HAD-like 132 462 IPR036412 -
Lcy9g1400 468 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 464 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy9g1400 468 Gene3D - 159 319 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1400 K16055 - - csv:101204478 835.484
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1400 Lcy-Chr9:39029629 Lcy5g1792 Lcy-Chr5:40640939 6.17E-206 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1569 . 44 596 Trehalose Biosynthesis Gene Families AT4G24040 57.1 2.2e-193 672.9
Lcy4g0684 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 77.8 0.0e+00 1385.2
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1224.9
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1150.2
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.2 0.0e+00 1136.7
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.7 0.0e+00 1110.9
Lcy2g0645 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.0 8.7e-302 1033.5
Lcy8g1559 . 28 739 Trehalose Biosynthesis Gene Families AT1G06410 50.3 1.7e-217 753.4
Lcy5g1792 . 83 736 Trehalose Biosynthesis Gene Families AT1G16980 59.8 2.1e-234 809.3
Lcy9g1399 . 85 550 Trehalose Biosynthesis Gene Families AT1G16980 63.0 6.2e-170 595.1
Lcy9g1400 . 28 236 Trehalose Biosynthesis Gene Families AT1G16980 52.6 6.2e-61 233.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1356.7
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1216.4
Lcy7g1119 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1118.2
Lcy6g2240 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.0 0.0e+00 1112.8
Lcy4g0684 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.9 0.0e+00 1101.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G23870 62.2 1.1e-294 1010.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1345.1
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1220.7
Lcy7g1119 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
Lcy6g2240 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.5 0.0e+00 1083.9
Lcy4g0684 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.9e-312 1068.9
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G60140 61.7 8.6e-289 990.3
Lcy7g1119 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1414.1
Lcy6g2240 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1270.4
Lcy4g0684 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1145.2
Lcy7g0196 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 64.4 0.0e+00 1127.5
Lcy2g0645 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1099.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G68020 65.1 7.5e-309 1057.0
Lcy7g0196 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1204.9
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 64.4 0.0e+00 1115.1
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.0 4.2e-293 1004.6
Lcy4g0684 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 57.7 7.9e-292 1000.3
Lcy6g2240 . 77 929 Trehalose Biosynthesis Gene Families AT1G70290 57.1 6.5e-286 980.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.7e-265 911.8
Lcy5g1792 . 1 970 Trehalose Biosynthesis Gene Families AT1G78580 70.4 0.0e+00 1347.8
Lcy9g1399 . 1 550 Trehalose Biosynthesis Gene Families AT1G78580 75.2 7.1e-228 788.1
Lcy9g1400 . 28 467 Trehalose Biosynthesis Gene Families AT1G78580 70.8 2.5e-188 656.8
Lcy7g0196 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 62.3 2.1e-311 1065.4
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.5 1.0e-297 1020.0
Lcy2g0645 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.5 1.7e-297 1019.2
Lcy4g0684 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.2 1.2e-290 996.5
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 8.6e-289 990.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.6e-271 932.9
Lcy6g2240 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1382.9
Lcy7g1119 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1265.4
Lcy4g0684 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.4 0.0e+00 1162.1
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 64.5 0.0e+00 1153.7
Lcy2g0645 . 1 851 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1096.6
Lcy1g0253 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.0 1.2e-311 1066.2
Lcy5g1792 . 87 964 Trehalose Biosynthesis Gene Families AT4G27550 56.8 1.5e-284 976.1
Lcy9g1399 . 93 550 Trehalose Biosynthesis Gene Families AT4G27550 61.1 1.8e-155 547.4
Lcy9g1400 . 28 465 Trehalose Biosynthesis Gene Families AT4G27550 55.4 1.6e-132 471.1
Lcy5g1792 . 1 970 Trehalose Biosynthesis Gene Families AT1G78580 70.4 0.0e+00 1347.8
Lcy9g1399 . 1 550 Trehalose Biosynthesis Gene Families AT1G78580 75.2 7.1e-228 788.1
Lcy9g1400 . 28 467 Trehalose Biosynthesis Gene Families AT1G78580 70.8 2.5e-188 656.8
Lcy5g1792 . 83 736 Trehalose Biosynthesis Gene Families AT1G16980 59.8 2.1e-234 809.3
Lcy9g1399 . 85 550 Trehalose Biosynthesis Gene Families AT1G16980 63.0 6.2e-170 595.1
Lcy9g1400 . 28 236 Trehalose Biosynthesis Gene Families AT1G16980 52.6 6.2e-61 233.0
Lcy5g1792 . 88 651 Trehalose Biosynthesis Gene Families AT1G17000 56.4 1.7e-182 637.1
Lcy9g1399 . 83 550 Trehalose Biosynthesis Gene Families AT1G17000 56.4 1.3e-142 504.6
Lcy5g1792 . 87 964 Trehalose Biosynthesis Gene Families AT4G27550 56.8 1.5e-284 976.1
Lcy9g1399 . 93 550 Trehalose Biosynthesis Gene Families AT4G27550 61.1 1.8e-155 547.4
Lcy9g1400 . 28 465 Trehalose Biosynthesis Gene Families AT4G27550 55.4 1.6e-132 471.1
Lcy6g2240 . 77 915 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1382.9
Lcy7g1119 . 1 847 Trehalose Biosynthesis Gene Families AT4G17770 71.4 0.0e+00 1265.4
Lcy4g0684 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.4 0.0e+00 1162.1
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 64.5 0.0e+00 1153.7
Lcy2g0645 . 1 851 Trehalose Biosynthesis Gene Families AT4G17770 61.0 0.0e+00 1096.6
Lcy1g0253 . 1 752 Trehalose Biosynthesis Gene Families AT4G17770 67.0 1.2e-311 1066.2
Lcy7g1119 . 1 851 Trehalose Biosynthesis Gene Families AT1G68020 79.5 0.0e+00 1414.1
Lcy6g2240 . 77 921 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1270.4
Lcy4g0684 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1145.2
Lcy7g0196 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 64.4 0.0e+00 1127.5
Lcy2g0645 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 62.5 0.0e+00 1099.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G68020 65.1 7.5e-309 1057.0
Lcy4g0684 . 1 854 Trehalose Biosynthesis Gene Families AT1G06410 77.8 0.0e+00 1385.2
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1224.9
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1150.2
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G06410 64.2 0.0e+00 1136.7
Lcy7g0196 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.7 0.0e+00 1110.9
Lcy2g0645 . 1 852 Trehalose Biosynthesis Gene Families AT1G06410 59.0 8.7e-302 1033.5
Lcy8g1559 . 28 739 Trehalose Biosynthesis Gene Families AT1G06410 50.3 1.7e-217 753.4
Lcy7g0196 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.8 0.0e+00 1204.9
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G70290 64.4 0.0e+00 1115.1
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 58.0 4.2e-293 1004.6
Lcy4g0684 . 1 847 Trehalose Biosynthesis Gene Families AT1G70290 57.7 7.9e-292 1000.3
Lcy6g2240 . 77 929 Trehalose Biosynthesis Gene Families AT1G70290 57.1 6.5e-286 980.7
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G70290 57.9 3.7e-265 911.8
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.9 0.0e+00 1356.7
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1216.4
Lcy7g1119 . 1 860 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1118.2
Lcy6g2240 . 77 919 Trehalose Biosynthesis Gene Families AT1G23870 63.0 0.0e+00 1112.8
Lcy4g0684 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.9 0.0e+00 1101.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G23870 62.2 1.1e-294 1010.0
Lcy7g0196 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.7 0.0e+00 1345.1
Lcy2g0645 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 67.4 0.0e+00 1220.7
Lcy7g1119 . 1 858 Trehalose Biosynthesis Gene Families AT1G60140 61.4 0.0e+00 1085.5
Lcy6g2240 . 77 924 Trehalose Biosynthesis Gene Families AT1G60140 60.5 0.0e+00 1083.9
Lcy4g0684 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 1.9e-312 1068.9
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT1G60140 61.7 8.6e-289 990.3
Lcy7g0196 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 62.3 2.1e-311 1065.4
Lcy6g2240 . 77 920 Trehalose Biosynthesis Gene Families AT2G18700 58.5 1.0e-297 1020.0
Lcy2g0645 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.5 1.7e-297 1019.2
Lcy4g0684 . 1 841 Trehalose Biosynthesis Gene Families AT2G18700 57.2 1.2e-290 996.5
Lcy7g1119 . 1 849 Trehalose Biosynthesis Gene Families AT2G18700 57.0 8.6e-289 990.3
Lcy1g0253 . 1 755 Trehalose Biosynthesis Gene Families AT2G18700 58.6 1.6e-271 932.9
Lcy12g1569 . 44 596 Trehalose Biosynthesis Gene Families AT4G24040 57.1 2.2e-193 672.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018174 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 5