Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1400 ATGCTAGGCCACAGCGTCGAGACGTTAGGCCTCGGGTTGATGGCATTTTGTAGCGTCTTGACGCTTCCTTCTCGAGTTTTTGGCTTGGAATTGAAAACAAAGTTTGCTGGTGCTGCACAATCTCTGGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAATAGAAGTCACAAAATCAATTGATCGAGCATTAAATATGAGTGCTGATGAAAGAGAAAAGCGACATAGGCATAATTTTCTCCATGTGACAACACACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATAAGACAATCTCCACCCCTGCTTCCATCTGACGATGCAGTTAAACGTTATGACCAATCGACTAATCGATTACTTATATTGGGCTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCGGATTTGAAAGAACCATTGACAGCAATTTGCAACGATCCAAATACGACAGTAGTTATCCTCAGTGGGAGTGACAGAACTGTCTTGGACGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTTACAAGAGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTACAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGGTCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTCGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCGTCAGATACCATAGGCATGGCAAGAGCCAAGGGAACCGACGGACTTAAGTTAACTGGTGAGAGAAGATCTTCCATTAAAGTTCCTGTAAATAGGAATGGATCAAAATCGCCTCACAATAAGGCGCGGTCAAATTCGGAGAAGAAAACTTCAAATCATAACTGTGCAAATGGTCGTAAACCATCACCAGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCGTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCGGACGATGTCGTTACATTCCTTAAGGAGTTGGCAAGTGCAAACGCGTCTTCTTGA 1407 44.42 MLGHSVETLGLGLMAFCSVLTLPSRVFGLELKTKFAGAAQSLGAGALLVNPWNIIEVTKSIDRALNMSADEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQSPPLLPSDDAVKRYDQSTNRLLILGFNSTLTEPVDTPERRGDQIREMELKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRSSIKVPVNRNGSKSPHNKARSNSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKELASANASS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39029629 39033975 + Maker00016942 Lcy9g1400 642516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1400 468 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 225 305 - -
Lcy9g1400 468 MobiDBLite consensus disorder prediction 382 416 - -
Lcy9g1400 468 Gene3D Glycogen Phosphorylase B; 34 85 - -
Lcy9g1400 468 FunFam Trehalose-6-phosphatase synthase S4 271 385 - -
Lcy9g1400 468 FunFam Alpha,alpha-trehalose-phosphate synthase 159 230 - -
Lcy9g1400 468 Pfam Trehalose-phosphatase 158 365 IPR003337 GO:0005992(InterPro)
Lcy9g1400 468 Gene3D - 225 305 - -
Lcy9g1400 468 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 28 103 - -
Lcy9g1400 468 CDD HAD_TPP 133 353 - -
Lcy9g1400 468 Pfam Glycosyltransferase family 20 34 100 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lcy9g1400 468 Gene3D Glycogen Phosphorylase B; 86 97 - -
Lcy9g1400 468 SUPERFAMILY HAD-like 132 462 IPR036412 -
Lcy9g1400 468 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 464 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lcy9g1400 468 Gene3D - 159 319 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1400 Lcy-Chr9:39029629 Lcy5g1792 Lcy-Chr5:40640939 6.17E-206 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1400 K16055 - csv:101204478 835.484