Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1406 ATGGATTCTCTCCATGGCTTACCTCCCATCAAAAGGCTCAGAATCCTTCAGGAACAGGAACGAAAGCGGCAGCAAGAGGATCAGTCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGGAAGGAGTCTCGTGATTCGTCATTTCTCGTCCCTGACGTCACATTGCCCCACAGAACCGCCATTTCCGCTTCTCCTTACTGCTTGCCGACGAAGAAAAGGGTCTGGGCGCTTCACCCAGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCACCTCCGGAGGAAGAATCGATTTCGAAAACAGAACCAGAGATAGAGAAAAAGGAGAAGGAAGAGGAAAAGGAAAATGAAAAGGAAATTTCTGATGTTGAGATTGAGATTCAAGCGATTGAATCTACCCAAGAAGAAGATGAAGAAGAAGACGATGGGATCCTATGTGCGATTTGTCAAAGTACGGATGGGGATCCTTCGGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTGGTGAAGAACGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGACTGAGAAGAAGATTTCTGAAACTCCATTCTCGTGCTGCCTCTGTCCTCTCAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATATTGTGTGTGGCCTCTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATTGATTGCTCCAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCTAGAGGTTGTGCCATTGATTGCTCAGAGCCTAAGTGCAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTTTGTATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGAAATCATACCGACTTGTGGAAGAAGCAACAACTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1041 46.49 MDSLHGLPPIKRLRILQEQERKRQQEDQSLDSCSLPAKKRKESRDSSFLVPDVTLPHRTAISASPYCLPTKKRVWALHPDFAPESLDLNVEYKPPPEEESISKTEPEIEKKEKEEEKENEKEISDVEIEIQAIESTQEEDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCIQCLASSSSKTEKKISETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39084841 39087500 + Maker00017053 Lcy9g1406 642522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1406 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 326 IPR013083 -
Lcy9g1406 346 SMART PHD_3 269 324 IPR001965 -
Lcy9g1406 346 SMART PHD_3 148 197 IPR001965 -
Lcy9g1406 346 MobiDBLite consensus disorder prediction 14 47 - -
Lcy9g1406 346 ProSiteProfiles Zinc finger PHD-type profile. 146 199 IPR019787 -
Lcy9g1406 346 Coils Coil 109 143 - -
Lcy9g1406 346 MobiDBLite consensus disorder prediction 88 128 - -
Lcy9g1406 346 MobiDBLite consensus disorder prediction 91 128 - -
Lcy9g1406 346 Pfam PHD-zinc-finger like domain 214 311 - -
Lcy9g1406 346 MobiDBLite consensus disorder prediction 1 49 - -
Lcy9g1406 346 Pfam PHD-finger 149 196 IPR019787 -
Lcy9g1406 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 210 IPR013083 -
Lcy9g1406 346 SUPERFAMILY FYVE/PHD zinc finger 134 204 IPR011011 -
Lcy9g1406 346 PANTHER PHD FINGER PROTEINS 19 324 IPR050701 GO:0006357(PANTHER)
Lcy9g1406 346 CDD PHD_BRPF_JADE_like 148 196 - -
Lcy9g1406 346 ProSiteProfiles Extended PHD (ePHD) domain profile. 212 324 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1318 Lcy-Chr12:28903598 Lcy9g1406 Lcy-Chr9:39084841 5.03E-85 dispersed
Lcy6g0074 Lcy-Chr6:692091 Lcy9g1406 Lcy-Chr9:39084841 1.18E-20 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20662 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1406 K11380 - csv:101203744 557.755