Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1420 | ATGGCCGATGCGGTTACTATTTCAATTTGGTCAGTCGTGGTTTGTTTGGTTGTATTGGGATGGAAAGTTCTGAACTATATTTGGCTGAGGCCGAAGAAATTAGAGAAGCTTCTCAGACGGCAAGGATTCGCCGGAAATTCTTACCGGATTCTCTACGGCGACTTGAAGGACAGAGCCGCCATGAGGGAGCGGGCCATCGCCCAGCCGATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCTTCACACCATCCAGAATTATGGTAAAAATTCATTTATGTGGCTTGGCCCCATACCAAGAGTGCACATCATGGACCCTGAACAACTTAAAACTGTGTTTACATTAATCAATGATTTCCAAAAGCCAGTCATGAATCCCCTTGTCAAGTTGCTTGCAGATGGACTTGTAAACCATGAAGGAGCAAAATGGGCCAAACATAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTCAAGGACATGGTACCAGCATTCTATCACAGTGCTAACGAGATGGTTAGCAAATGGGAAAGCATGGTTTCTGAAGAAGGATCATGTGAGTTGGATGTAATGCCTTATCTACTAAATATGACTGCCGATGTCATTTCTCGAACAGCATTTGGAAGTAGCTATGAAAAAGGGAAAAAGATCTTCAAGCTTCAAACTGAACTAGCTGATTTGGTGATTCAATCTACCATGGGAATTTATATTCCAGGATGGAGATTTCTACCCACAAAGTCAAACAAAAAAATGAAAGAGATGAGTAAAGAGATAAAAACTTTGATCATGGGTATTATAAATGAACGACAGAAGTCTATGAAGGCAGGTGAATCTACACACAACGATCTATTAGGCATTCTCATGGAATCCAATTTCAAAGAAATTCAAGAACATGGAAACAATAATAAAGACATTGGAATGAGCATAGAAGATGTTATTGAAGAATGCAAGATTTTCTACCTTGGTGGCCAAGAAACTACTGCTACGTTACTAATTTGGACGATGGTTTTGTTGAGTTCATACTCAGAATGGCAAGAGCGAGCGAGAAAAGAGGTCTTCGAGGTAACTATGATTCTCAATGAGGTTTTCAGGTTATACCCACCAGCAAACATGCTTGGTCGTGTTGTTAAAAAAGAAACACGACTTGGAAAATTGACTTTACCAGCAGGAGTGATGATAGGCATACCAATGATTCTTATCCAACGTGATCATGAGCTATGGGGTGAAGATGCAGATGAATTTAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCAACCAAAAATCCAATCGCTTTCGTCCCATTTGGTTGGGGTCCTCGTATATGCATAGGACTAAACTTTGCTATGATTGAAGCAAAAATGGCATTATCAATAATCCTACAACGCTTCTCATTTGAGCTTTCTTCATCGTATACTCACGCTCCTACCGCAGCTTTAACAACCCAACCTCAACATGGAGCTCATATCGTCCTCCACAAACTCTAG | 1503 | 40.39 | MADAVTISIWSVVVCLVVLGWKVLNYIWLRPKKLEKLLRRQGFAGNSYRILYGDLKDRAAMRERAIAQPMNFSNDIAPRVIPSVLHTIQNYGKNSFMWLGPIPRVHIMDPEQLKTVFTLINDFQKPVMNPLVKLLADGLVNHEGAKWAKHRKIINPAFHLEKLKDMVPAFYHSANEMVSKWESMVSEEGSCELDVMPYLLNMTADVISRTAFGSSYEKGKKIFKLQTELADLVIQSTMGIYIPGWRFLPTKSNKKMKEMSKEIKTLIMGIINERQKSMKAGESTHNDLLGILMESNFKEIQEHGNNNKDIGMSIEDVIEECKIFYLGGQETTATLLIWTMVLLSSYSEWQERARKEVFEVTMILNEVFRLYPPANMLGRVVKKETRLGKLTLPAGVMIGIPMILIQRDHELWGEDADEFKPERFSEGVSKATKNPIAFVPFGWGPRICIGLNFAMIEAKMALSIILQRFSFELSSSYTHAPTAALTTQPQHGAHIVLHKL | 500 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39191794 | 39195705 | - | Maker00016376 | Lcy9g1420 | 642536 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1420 | 500 | Gene3D | Cytochrome P450 | 77 | 499 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 438 | 448 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 402 | 426 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | E-class P450 group I signature | 448 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 13 | 492 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy9g1420 | 500 | CDD | CYP72 | 81 | 496 | - | - | |
| Lcy9g1420 | 500 | SUPERFAMILY | Cytochrome P450 | 81 | 498 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 441 | 450 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | P450 superfamily signature | 362 | 373 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | P450 superfamily signature | 439 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | PRINTS | P450 superfamily signature | 448 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1420 | 500 | FunFam | Cytochrome P450 734A1 | 28 | 500 | - | - | |
| Lcy9g1420 | 500 | Pfam | Cytochrome P450 | 89 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1420 | Lcy-Chr9:39191794 | Lcy9g1423 | Lcy-Chr9:39233141 | 1.07E-232 | dispersed | |
| Lcy9g1418 | Lcy-Chr9:39151275 | Lcy9g1420 | Lcy-Chr9:39191794 | 1.05E-276 | proximal | |
| Lcy9g1420 | Lcy-Chr9:39191794 | Lcy9g1421 | Lcy-Chr9:39208785 | 0 | tandem |
Pathway information