Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1421 | ATGGCCGACGCGGTTACTATTTCAATTTGGACGGTCGTGGTTTGTTTGGTTGTATTGGGATGGAAAGTTCTGAACTGGATTTGGCTGAGGCCCAAGAAATTAGAGAAGCTTCTGAGACAGCATGGATTCGCCGGAAATTCTTACCGGATTCTCTACGGCGACTTGAAGGACAGAGCCGCCATGAGGGAGCGGGCCATCTCCAAGCCGATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCTTCACACCATCCAGATTTATGGTAAAAATTCATTTATGTGGCTTGGCCCCATACCAAGAGTGCACATCATGGACCCTGAACAACTTAAAACTGTGTTTACATTAATCAATGATTTCCAAAAGCCAGTCATGAATCCCCTTGTCAAGTTGCTTGCAGATGGACTTGTAAACCATGAAGGAGCAAAATGGGCCAAACATAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTCAAGGACATGGTACCAGCATTCTATCATAGTGCTAACGAGATGGTTAGCAAATGGGAAACCATGGTTTCTGAAGAGGGATCATGTGAGTTGGATGTAATGCCTTTTCTACAAAATATGGCTGCTGATGTCATTTCTCGAACAGCATTTGGAAGTAGCTACGAAAAAGGAAAAAAGATCTTCAAGCTTCAAACTGAACTAGCTGATTTGGTGATTCAATCTACCATGGGAATTTATATTCCAGGATGGAAATTTCTACCCACAAAGTCGAACAATAAAATGAAAGAGATGAGTAATGAGATAAAAAAATTGATATTGGGTATCATAAATGAACGACAGAAGTCTATGAAGGCAGGTGAAGTTGCACAAGGCGATCTATTAGGCATTCTCATGGAATCCAATTTCAAAGAAATTCAAGAACATGGAAACAATAAAGACATTGGAATGAGCATAGAAGATGTTATTGATGAATGCAAGATTTTCTACATTGCTGGCCAAGAAACTACTGCTACATTACTAATTTGGACGATGGTTTTGTTGAGTTCATACTCAGAATGGCAAGAGCGAGCGAGAAAAGAGGTCTTCGAGGTCTTTGGCAACAAAAAACCAGATTATGATGGTTTAAGTCACTTAAAAGTGGTAACTATGATTCTCAATGAGGTTCTCAGGTTATACCCACCAGTGAGCATGCTTGGTCGTGTTGTTAAAAAAGAAACACGACTTGGAAAATTGACGTTACCAGCAGGAGTGATGATAGGCTTACCAATGATTCTTATCCAACGTGATCATGAGCTATGGGGTGAAGATGCAGATGAATTCAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCAACCAAAAATCCAACCGCTTTCGTCCCATTTGGTTGGGGTCCTCGTATATGCATAGGACTAAACTTTGCTATGATTGAAGCAAAAATGGCATTATCAATAATCCTACAACGCTTCTCATTTGAGCTTTCTTCATCGTATACTCACGCTCCTACCGCAGCTTTAACAACCCAACCTCAACATGGAGCTCATATTGTCCTACACAAACTCTAG | 1551 | 40.43 | MADAVTISIWTVVVCLVVLGWKVLNWIWLRPKKLEKLLRQHGFAGNSYRILYGDLKDRAAMRERAISKPMNFSNDIAPRVIPSVLHTIQIYGKNSFMWLGPIPRVHIMDPEQLKTVFTLINDFQKPVMNPLVKLLADGLVNHEGAKWAKHRKIINPAFHLEKLKDMVPAFYHSANEMVSKWETMVSEEGSCELDVMPFLQNMAADVISRTAFGSSYEKGKKIFKLQTELADLVIQSTMGIYIPGWKFLPTKSNNKMKEMSNEIKKLILGIINERQKSMKAGEVAQGDLLGILMESNFKEIQEHGNNKDIGMSIEDVIDECKIFYIAGQETTATLLIWTMVLLSSYSEWQERARKEVFEVFGNKKPDYDGLSHLKVVTMILNEVLRLYPPVSMLGRVVKKETRLGKLTLPAGVMIGLPMILIQRDHELWGEDADEFKPERFSEGVSKATKNPTAFVPFGWGPRICIGLNFAMIEAKMALSIILQRFSFELSSSYTHAPTAALTTQPQHGAHIVLHKL | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39208785 | 39212678 | - | Maker00016803 | Lcy9g1421 | 642537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1421 | 516 | CDD | CYP72 | 81 | 512 | - | - | |
| Lcy9g1421 | 516 | Gene3D | Cytochrome P450 | 77 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 315 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | P450 superfamily signature | 326 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 13 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy9g1421 | 516 | FunFam | Cytochrome P450 734A1 | 28 | 516 | - | - | |
| Lcy9g1421 | 516 | Pfam | Cytochrome P450 | 90 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1421 | 516 | SUPERFAMILY | Cytochrome P450 | 81 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1679 | Lcy-Chr2:25043966 | Lcy9g1421 | Lcy-Chr9:39208785 | 1.32E-274 | dispersed | |
| Lcy2g1758 | Lcy-Chr2:28016628 | Lcy9g1421 | Lcy-Chr9:39208785 | 1.52E-261 | dispersed | |
| Lcy9g0284 | Lcy-Chr9:7371433 | Lcy9g1421 | Lcy-Chr9:39208785 | 0 | dispersed | |
| Lcy9g1418 | Lcy-Chr9:39151275 | Lcy9g1421 | Lcy-Chr9:39208785 | 7.68E-290 | dispersed | |
| Lcy9g1421 | Lcy-Chr9:39208785 | Lcy9g2180 | Lcy-Chr9:46464919 | 5.26E-126 | dispersed | |
| Lcy9g1421 | Lcy-Chr9:39208785 | Lcy9g1423 | Lcy-Chr9:39233141 | 7.21E-247 | proximal | |
| Lcy9g1420 | Lcy-Chr9:39191794 | Lcy9g1421 | Lcy-Chr9:39208785 | 0 | tandem |
Pathway information