Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1423 ATGTCGATCGCCGTTGCAATTTCAGTCAGCATTCTGGTAGGATCTCTTCTGGCATGGGGATGGAGGTTTCTGAACTGGATTTGGCTGAAGCCGAAGAAGCTCGAGAAGCACTTAAGACAGCAAGGCCTCACCGGAAGTTCCTATCGCCTTCTCTATGGCGATTCGAAGGACATGGCGACGGCGATTCGCGAGGCCAGATCGCAGCCGATGAACTTCTCTCATGATATTGCTCATCGCGCCGTCCCTTCCTCTCATATCACCATCAATAAATATGGTAAGAATTCTTTCGTATGGGTTGGCCCAACTCCCAGAGTGTATATAACGGATCCTGAACAACTTAAGGCTGTCTTTTCTCTCATCAATGACATTCGTAAAGCATCTTTGTTTCCTCTTGCAAGAAGACCTGGAGGTGGACTTGTCTCTCTCGAGGGGCCTAAATGGGCTAAACATAGAAAAATCATCAATCCAGCATTTCATACAGAAAAGTTGAAGGATATGTTTCCAGCATTCTCGGAGAGTTGTAATGAGATGATTAGCAAATGGGAAAAGATGGTCTCTGAGAAAAAAGGGTCTTTTGAGTTAGATGTTTGGCCTGATTTGCAAAGTATGACTGCAGATGTGATTTCTCGAACAGCATTTGGGAGTAGCTATGAGGAAGGAAAAAAGATATTCCAATTTTTGAAAAACTGGATTTCCCTACTGGTAACATGTCTAACAAAGGGAGTCTACAATATTCCTGGGTGGAGGTTTATACCAACCAAGTTGAATAGGAAGATGGAAGAGATTACTAGAGAAATACATACTATGGTTTGTGGTATTATAAGCAAAAGACAAATGGCTATGGAGGAGGGTGAAGCTTCTAATGCTGATCTATTAGGGATCCTTTTGGAATCCAATTTAAATCAAGTTCGAGAGCAAGAAAATAAGAAAGATGTTGGAATGAGTATGGAAGATATAATTAGTGAATGTAAGCTCTTTTATTTTGCTGGCCAAGAAACCACAGCCGCATTGCTTGTCTGGACGATGGTTCTACTTGGTCGGTATCCAGAATGGCAAGATCGAGCAAGAGCAGAAGTGCTTGAAGTTTTTGGCAATGACAACAAATTGAATTTTGATGGTTTAAGTCATCTTAAAGTAGTAACCATGATACTAAATGAAGTTCTTAGACTCTATCCTCCCATTGGTATCTTAGCTCGAGCGATTCACAAGGAAACGAAACTTGGGAGCTTGTTATTACCGGCTGGAGTGTCGATAGGTATACCGATCATTAACGTCCACCACGACTACCAAATATGGGGGGAAGATGCAAACGAGTTCAAACCAGAGAGGTTTTCGGAGGGAGTTTCCAAAGCAACAAGGAATCAAGTCTGCTTCTTGCCTTTCGGATGGGGTCCTCGAATTTGTGTTGGCCAAAACTTTGCCATGATCGAAGCAAAAATAGCACTGTCAATGATTTTGCAACGATTCTCTTTTGAACTTTCCCCATCTTATACTCATGCTCCTATTTCAAATGTGACTATTCAACCACAACATGGAGCTCATCTTATCCTCCATAAGCTGTAA 1563 42.03 MSIAVAISVSILVGSLLAWGWRFLNWIWLKPKKLEKHLRQQGLTGSSYRLLYGDSKDMATAIREARSQPMNFSHDIAHRAVPSSHITINKYGKNSFVWVGPTPRVYITDPEQLKAVFSLINDIRKASLFPLARRPGGGLVSLEGPKWAKHRKIINPAFHTEKLKDMFPAFSESCNEMISKWEKMVSEKKGSFELDVWPDLQSMTADVISRTAFGSSYEEGKKIFQFLKNWISLLVTCLTKGVYNIPGWRFIPTKLNRKMEEITREIHTMVCGIISKRQMAMEEGEASNADLLGILLESNLNQVREQENKKDVGMSMEDIISECKLFYFAGQETTAALLVWTMVLLGRYPEWQDRARAEVLEVFGNDNKLNFDGLSHLKVVTMILNEVLRLYPPIGILARAIHKETKLGSLLLPAGVSIGIPIINVHHDYQIWGEDANEFKPERFSEGVSKATRNQVCFLPFGWGPRICVGQNFAMIEAKIALSMILQRFSFELSPSYTHAPISNVTIQPQHGAHLILHKL 520
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 39233141 39238306 - Maker00016513 Lcy9g1423 642539
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1423 520 SUPERFAMILY Cytochrome P450 87 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 FunFam Cytochrome P450 734A1 28 520 - -
Lcy9g1423 520 Pfam Cytochrome P450 89 503 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 513 IPR050665 GO:0004497(PANTHER)
Lcy9g1423 520 Gene3D Cytochrome P450 85 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 CDD CYP72 81 516 - -
Lcy9g1423 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy9g1423 520 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0953 Lcy-Chr2:8864475 Lcy9g1423 Lcy-Chr9:39233141 1.29E-172 dispersed
Lcy9g1420 Lcy-Chr9:39191794 Lcy9g1423 Lcy-Chr9:39233141 1.07E-232 dispersed
Lcy9g1423 Lcy-Chr9:39233141 Lcy9g2180 Lcy-Chr9:46464919 5.09E-136 dispersed
Lcy9g1421 Lcy-Chr9:39208785 Lcy9g1423 Lcy-Chr9:39233141 7.21E-247 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1423 - - - 0.0