Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1423 | ATGTCGATCGCCGTTGCAATTTCAGTCAGCATTCTGGTAGGATCTCTTCTGGCATGGGGATGGAGGTTTCTGAACTGGATTTGGCTGAAGCCGAAGAAGCTCGAGAAGCACTTAAGACAGCAAGGCCTCACCGGAAGTTCCTATCGCCTTCTCTATGGCGATTCGAAGGACATGGCGACGGCGATTCGCGAGGCCAGATCGCAGCCGATGAACTTCTCTCATGATATTGCTCATCGCGCCGTCCCTTCCTCTCATATCACCATCAATAAATATGGTAAGAATTCTTTCGTATGGGTTGGCCCAACTCCCAGAGTGTATATAACGGATCCTGAACAACTTAAGGCTGTCTTTTCTCTCATCAATGACATTCGTAAAGCATCTTTGTTTCCTCTTGCAAGAAGACCTGGAGGTGGACTTGTCTCTCTCGAGGGGCCTAAATGGGCTAAACATAGAAAAATCATCAATCCAGCATTTCATACAGAAAAGTTGAAGGATATGTTTCCAGCATTCTCGGAGAGTTGTAATGAGATGATTAGCAAATGGGAAAAGATGGTCTCTGAGAAAAAAGGGTCTTTTGAGTTAGATGTTTGGCCTGATTTGCAAAGTATGACTGCAGATGTGATTTCTCGAACAGCATTTGGGAGTAGCTATGAGGAAGGAAAAAAGATATTCCAATTTTTGAAAAACTGGATTTCCCTACTGGTAACATGTCTAACAAAGGGAGTCTACAATATTCCTGGGTGGAGGTTTATACCAACCAAGTTGAATAGGAAGATGGAAGAGATTACTAGAGAAATACATACTATGGTTTGTGGTATTATAAGCAAAAGACAAATGGCTATGGAGGAGGGTGAAGCTTCTAATGCTGATCTATTAGGGATCCTTTTGGAATCCAATTTAAATCAAGTTCGAGAGCAAGAAAATAAGAAAGATGTTGGAATGAGTATGGAAGATATAATTAGTGAATGTAAGCTCTTTTATTTTGCTGGCCAAGAAACCACAGCCGCATTGCTTGTCTGGACGATGGTTCTACTTGGTCGGTATCCAGAATGGCAAGATCGAGCAAGAGCAGAAGTGCTTGAAGTTTTTGGCAATGACAACAAATTGAATTTTGATGGTTTAAGTCATCTTAAAGTAGTAACCATGATACTAAATGAAGTTCTTAGACTCTATCCTCCCATTGGTATCTTAGCTCGAGCGATTCACAAGGAAACGAAACTTGGGAGCTTGTTATTACCGGCTGGAGTGTCGATAGGTATACCGATCATTAACGTCCACCACGACTACCAAATATGGGGGGAAGATGCAAACGAGTTCAAACCAGAGAGGTTTTCGGAGGGAGTTTCCAAAGCAACAAGGAATCAAGTCTGCTTCTTGCCTTTCGGATGGGGTCCTCGAATTTGTGTTGGCCAAAACTTTGCCATGATCGAAGCAAAAATAGCACTGTCAATGATTTTGCAACGATTCTCTTTTGAACTTTCCCCATCTTATACTCATGCTCCTATTTCAAATGTGACTATTCAACCACAACATGGAGCTCATCTTATCCTCCATAAGCTGTAA | 1563 | 42.03 | MSIAVAISVSILVGSLLAWGWRFLNWIWLKPKKLEKHLRQQGLTGSSYRLLYGDSKDMATAIREARSQPMNFSHDIAHRAVPSSHITINKYGKNSFVWVGPTPRVYITDPEQLKAVFSLINDIRKASLFPLARRPGGGLVSLEGPKWAKHRKIINPAFHTEKLKDMFPAFSESCNEMISKWEKMVSEKKGSFELDVWPDLQSMTADVISRTAFGSSYEEGKKIFQFLKNWISLLVTCLTKGVYNIPGWRFIPTKLNRKMEEITREIHTMVCGIISKRQMAMEEGEASNADLLGILLESNLNQVREQENKKDVGMSMEDIISECKLFYFAGQETTAALLVWTMVLLGRYPEWQDRARAEVLEVFGNDNKLNFDGLSHLKVVTMILNEVLRLYPPIGILARAIHKETKLGSLLLPAGVSIGIPIINVHHDYQIWGEDANEFKPERFSEGVSKATRNQVCFLPFGWGPRICVGQNFAMIEAKIALSMILQRFSFELSPSYTHAPISNVTIQPQHGAHLILHKL | 520 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39233141 | 39238306 | - | Maker00016513 | Lcy9g1423 | 642539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1423 | 520 | SUPERFAMILY | Cytochrome P450 | 87 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | FunFam | Cytochrome P450 734A1 | 28 | 520 | - | - | |
| Lcy9g1423 | 520 | Pfam | Cytochrome P450 | 89 | 503 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 11 | 513 | IPR050665 | GO:0004497(PANTHER) | |
| Lcy9g1423 | 520 | Gene3D | Cytochrome P450 | 85 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | CDD | CYP72 | 81 | 516 | - | - | |
| Lcy9g1423 | 520 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy9g1423 | 520 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0953 | Lcy-Chr2:8864475 | Lcy9g1423 | Lcy-Chr9:39233141 | 1.29E-172 | dispersed | |
| Lcy9g1420 | Lcy-Chr9:39191794 | Lcy9g1423 | Lcy-Chr9:39233141 | 1.07E-232 | dispersed | |
| Lcy9g1423 | Lcy-Chr9:39233141 | Lcy9g2180 | Lcy-Chr9:46464919 | 5.09E-136 | dispersed | |
| Lcy9g1421 | Lcy-Chr9:39208785 | Lcy9g1423 | Lcy-Chr9:39233141 | 7.21E-247 | proximal |
Pathway information