Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1445 ATGGCGGACTTCAACCTTCGTCCTCTTGCTTCCGCAGTTCTGTTTCTTCTGCTTATTCCTTCGGTGATGGCTGCAGACTGCCAGTGTCCGGAAGAAGAAGAGGACGCAGGAGTACGGAATGATACACTCGCTCTTAAATACAAAATCGTCGCCATAGCTACGATTCTCGTCGCCGGAATCATCGGAGTGTTTATTCCGATGCTTGGAAAGACGTTTCCATCTCTGAGTCCTGAGAAGGAGGTTTTCTTTGTGATCAAGGCTTTTGCCGCGGGCGTCATATTGGCGACCGGTTTCATCCACGTTCTTCCCGACGCTTACGGGAGCTTGACGTCTTCAAAATTGAAAGAGAATCCATGGGGGAAATTTCCGTTCACCGGCTTGGTGGCTATGGTGGCCGCCATCGGCACTTTGATGGTGGATGCCGGTGCGAGCTCCTATTATACTCGGATTCATCGTAATAAGGCTCAGCCTGAGGTTAACGCGGATGAAGAGATGCACGGCAGCAGCGCTCACGACGGTCATGTCCATGTTCACACTCACGGCACTCATGGCCACGCTCATGGCTCGGCCGATGTCGCCGGAACCACGGCGGAGATTCTCCGGCACCGCGTACTTGAGCTGGGCATAGTGGTACATTCGGTAATTATAGGGATCGGTTTGGGCGTTTCTGAAACTCCAAAAACGATAAGACCTCTTGTGGCCGCCATCACTTTTCATCAGTTATTTGAAGGCATGGGTCTAGGAGGCTGCATTGCTCAGGCAAAGTTCAAGAACAGAGCAACAATATTAATGGCACTTTTCTTCTGCCTGACAACCCCAGTTGGGATAGCAATAGGCATTGGAGTAACTAAGACTTACGACGAAGAGAGTCCAAAAGCACTTATAGTTGAGGGGATTTTGAATGCAGCTTCTGCTGGTATTTTAATCTACATGGCACTTGTGGATCTTTTGGCTGCTGATTTTATGAACCCTAGAATGCAGAGCAATGGAAGACTTCAAATTTTGGCTAACCTTTCCCTTATTCTTGGAGCTGCCTTGATGTCTTTACTTGCTATATGGGCCTAA 1065 49.01 MADFNLRPLASAVLFLLLIPSVMAADCQCPEEEEDAGVRNDTLALKYKIVAIATILVAGIIGVFIPMLGKTFPSLSPEKEVFFVIKAFAAGVILATGFIHVLPDAYGSLTSSKLKENPWGKFPFTGLVAMVAAIGTLMVDAGASSYYTRIHRNKAQPEVNADEEMHGSSAHDGHVHVHTHGTHGHAHGSADVAGTTAEILRHRVLELGIVVHSVIIGIGLGVSETPKTIRPLVAAITFHQLFEGMGLGGCIAQAKFKNRATILMALFFCLTTPVGIAIGIGVTKTYDEESPKALIVEGILNAASAGILIYMALVDLLAADFMNPRMQSNGRLQILANLSLILGAALMSLLAIWA 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39486126 39488723 - Maker00016787 Lcy9g1445 642561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1445 354 MobiDBLite consensus disorder prediction 162 179 - -
Lcy9g1445 354 Pfam ZIP Zinc transporter 46 351 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy9g1445 354 NCBIfam ZIP zinc/iron transport family 32 354 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Lcy9g1445 354 MobiDBLite consensus disorder prediction 162 189 - -
Lcy9g1445 354 PANTHER ZINC/IRON TRANSPORTER 41 353 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2186 Lcy-Chr13:40808162 Lcy9g1445 Lcy-Chr9:39486126 6.07E-93 dispersed
Lcy4g0047 Lcy-Chr4:773164 Lcy9g1445 Lcy-Chr9:39486126 1.01E-104 dispersed
Lcy4g0050 Lcy-Chr4:814116 Lcy9g1445 Lcy-Chr9:39486126 4.49E-120 dispersed
Lcy6g0237 Lcy-Chr6:2103732 Lcy9g1445 Lcy-Chr9:39486126 2.06E-59 dispersed
Lcy8g1729 Lcy-Chr8:43794340 Lcy9g1445 Lcy-Chr9:39486126 2.50E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1445 K14709 - csv:101215851 561.607