Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1459 ATGGAGCAGTTAAAATACTGCCTCCTTCAAATCTCTGTTGGTTTAGCTATTTCATTTCTGGTTAGTGCACAGGATCAATCAGGATTCATTAGCATTGACTGTGGGATTCCAAAGAATTCAAGCTACACAGACAGTGTAACAGGCATAAAGTACATTTCTGATGCAAACTTCACAGAAACTGGAGTAAGTAAGAGCATATCATCAGATTTCAATACTACTACTCTTCCACAGCAATTTTGGTATGTTAGAAGCTTTCCTGAAGGGGAGAGAAACTGTTTCATCATAAAGCTTGCTCAAGGTAAAGGTTTCAAGTATTTGATCCGAGCGAGTTTCATGTACGGAAACTATGACGGCGAAGGTAAAGCGCCGGTTTTTGATCTGTACATGGGAGTTAATAAATGGGATTCAGTAGTACTGAACAATGAATCCAGTATCATAACCAAAGAAGTTATACATGCACTTCCTACATCTTCTATATGCATATGTCTGGTGAATACTGGCTTTGGATCACCTTTTATATCATCATTGGAGTTTAGGCTTTTGAAAAATGCTAGTTATGTGACTGATTTCGAATTGCTCGCTCTCTACAGACGGTTGGATGTAGGTTCAACTACCAACAAAACTGTCAGGTACAAAGATGATTTTTGTGATCGGATTTGGTTTCCCTTTAACTTTCTTGAGTACAAAATTATAAGCACTTCATCCACAGTTGATTCAGGAGCTAGCAACACTTATAATTTACCAAGAATTGTAATGAGCACTGCTATCACAACCAATAATGCCAGTACTCCTCTAGATTTTCACTGGGTTCCTGAAGATCCCAGTGCCAAATATCATATATACTTGCACTTTGCTGATTTGGAAAAGCTCCAACCCAACCAATCAAGGGAATTTAGTATTTTTCAAAATGGGAATCATTTATATGGACCTTTCTCTCCTGATTACATGCAGTCAACTACACTGTTTAGCACATTCCCAATGAGTGGAGATGCTATTAAATTTTCATTATCAAAAACCAATGCATCAAATCTTCCACCCATCCTCAATGCTCTTGAAGTCTATAGGGTGCTAGATACATCACAATCGCGCACCAACGAGCAGGATGTTGCAGCTCTGATGAACATCAAATCATTTTATGGAGTGAGAAAGAATTGGCAGGGTGATCCATGCCTGCCAAAATCCTTCTTGTGGAACGGTATTGATTGTAGCTATGACGACCAGAGTCCTAATAGAATCACCTCCTTGAACTTATCTTCAAGTGGATTGGTGGGGGGAATAGCTACTTATGTATCCAAGCTCACATCATTACAATATTTGGATTTATCGAACAATAACTTGAGTGGACCGGTGCCTGGTTTTCTATCCGAGTTGTACTCCTTGAAAGTTTTAGATTTGAGGGGCAACCCACTTCTTGGTTCTATTCCAAGCGAACTCATGGAAAGGTCGAAGAACGGATCCCTTACAATAAGGGTTGGAGGAAATTCAGATCTTTGTGTTTCATCTTCTTGCCCAAAGAAGAAGAAAAGTTACATTATTCCAATTGTAGCAATAGTTTCATCATTGCTGGTCCTTTCAGCTGCAATAGCAGTCTGGATAATAAAATGGAGAAAACGAGCCCGAAAACTGCCGGTCATAAAACTCGGATCACTAGAGCCAAAGAAACAGCAGCTACCTTACTCACAAATACGGCGTATGACAAACAACTTCGAGACGAAAATCGGGGAAGGAGGATTCGCAAAAGTATTCCTTGGTTACTTGGATAACAATCAAGTTGCTGTGAAGGTCCTCAAGTCTTCAGTTCAAGGTTATAAAGAATTTGAAGCCGAGGTTAAACTTTTGCTAAGAATTCATCATACAAACTTGACAAGCCTTGTTGGATACTGCTATGAAAAGAACAACCTGGTTCTTATATATGAGTACATTAATAATGGCAACTTAAAAGAACATCTAACAGGTGGAAATGTTAGAGTTCTCAGTTGGGAGGAAAGGATGCAAATAGCAGTGGATGCAGCACAAGGATTGGAGTATCTGCATCATGGTTGTAAGCCACCAATTGTTCACAGAGATGTGAAGTCTGCGAACATCCTTTTGAATGAAAAATTCCAGGCCAAAATAGCTGATTTTGGTCTATCCAAGAGTTTCCCGACCGAAAATCATACTCATTTGACAACCGTTGTTGCAGGCACCGATGGTTATCTCGATCCTGAGTATTATGCAACTGGCTGGTTGACCGAGAAAAGTGATGTATACAGTTTTGGAGTTCTTGCATTGGAAATAATCACTTCTCGTCCTGTTCTCAGAATTGATAGAGCTTCTTCAGAAAAATACCATATAGGCCCATGGGTTATGCACTTGATGAAAACAGGTGATATAAGGAGCATAGTTGATGAAAGGTTAAGAGGAAACTTTGACTTGAGTTCTGCTTGGAAGGCTGTGGAGATTGCTATGACATGTTTGTCACTAAACTCTATTGAGAGGCCAAGTATGAAAGAGGTGGTTATGGAGTTGAGTGAGTGTTTGAAATCAGAGAGAGCTCGGAAAAGAAGAAACATCGATTCTAATACGAGAAAATCAAATGTAGTTAGTAGGAATTTCAGAGAGAGTGAAGTTACACCTCATGCTAGATAG 2628 39.46 MEQLKYCLLQISVGLAISFLVSAQDQSGFISIDCGIPKNSSYTDSVTGIKYISDANFTETGVSKSISSDFNTTTLPQQFWYVRSFPEGERNCFIIKLAQGKGFKYLIRASFMYGNYDGEGKAPVFDLYMGVNKWDSVVLNNESSIITKEVIHALPTSSICICLVNTGFGSPFISSLEFRLLKNASYVTDFELLALYRRLDVGSTTNKTVRYKDDFCDRIWFPFNFLEYKIISTSSTVDSGASNTYNLPRIVMSTAITTNNASTPLDFHWVPEDPSAKYHIYLHFADLEKLQPNQSREFSIFQNGNHLYGPFSPDYMQSTTLFSTFPMSGDAIKFSLSKTNASNLPPILNALEVYRVLDTSQSRTNEQDVAALMNIKSFYGVRKNWQGDPCLPKSFLWNGIDCSYDDQSPNRITSLNLSSSGLVGGIATYVSKLTSLQYLDLSNNNLSGPVPGFLSELYSLKVLDLRGNPLLGSIPSELMERSKNGSLTIRVGGNSDLCVSSSCPKKKKSYIIPIVAIVSSLLVLSAAIAVWIIKWRKRARKLPVIKLGSLEPKKQQLPYSQIRRMTNNFETKIGEGGFAKVFLGYLDNNQVAVKVLKSSVQGYKEFEAEVKLLLRIHHTNLTSLVGYCYEKNNLVLIYEYINNGNLKEHLTGGNVRVLSWEERMQIAVDAAQGLEYLHHGCKPPIVHRDVKSANILLNEKFQAKIADFGLSKSFPTENHTHLTTVVAGTDGYLDPEYYATGWLTEKSDVYSFGVLALEIITSRPVLRIDRASSEKYHIGPWVMHLMKTGDIRSIVDERLRGNFDLSSAWKAVEIAMTCLSLNSIERPSMKEVVMELSECLKSERARKRRNIDSNTRKSNVVSRNFRESEVTPHAR 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39622693 39627650 - Maker00016885 Lcy9g1459 642575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1459 875 MobiDBLite consensus disorder prediction 847 875 - -
Lcy9g1459 875 FunFam Leucine-rich repeat receptor-like kinase 367 500 - -
Lcy9g1459 875 SUPERFAMILY Protein kinase-like (PK-like) 550 836 IPR011009 -
Lcy9g1459 875 ProSiteProfiles Protein kinase domain profile. 567 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1459 875 Pfam Malectin-like domain 32 356 IPR024788 -
Lcy9g1459 875 Pfam Protein kinase domain 570 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1459 875 Gene3D Phosphorylase Kinase; domain 1 531 640 - -
Lcy9g1459 875 Gene3D Ribonuclease Inhibitor 366 491 IPR032675 -
Lcy9g1459 875 ProSitePatterns Protein kinases ATP-binding region signature. 573 594 IPR017441 GO:0005524(InterPro)
Lcy9g1459 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 685 697 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1459 875 SUPERFAMILY L domain-like 388 480 - -
Lcy9g1459 875 SMART serkin_6 567 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1459 875 PANTHER OS07G0107800 PROTEIN-RELATED 22 844 - -
Lcy9g1459 875 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 641 849 - -
Lcy9g1459 875 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515(InterPro)
Lcy9g1459 875 Gene3D Transferase(Phosphotransferase) domain 1 641 865 - -
Lcy9g1459 875 CDD STKc_IRAK 573 838 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0720 Lcy-Chr12:9154724 Lcy9g1459 Lcy-Chr9:39622693 7.56E-237 dispersed
Lcy3g2175 Lcy-Chr3:48649275 Lcy9g1459 Lcy-Chr9:39622693 2.55E-117 dispersed
Lcy3g2176 Lcy-Chr3:48662917 Lcy9g1459 Lcy-Chr9:39622693 2.56E-150 dispersed
Lcy3g2187 Lcy-Chr3:48788018 Lcy9g1459 Lcy-Chr9:39622693 2.97E-195 dispersed
Lcy3g2189 Lcy-Chr3:48802888 Lcy9g1459 Lcy-Chr9:39622693 2.03E-77 dispersed
Lcy3g2190 Lcy-Chr3:48804931 Lcy9g1459 Lcy-Chr9:39622693 2.42E-233 dispersed
Lcy7g0086 Lcy-Chr7:813779 Lcy9g1459 Lcy-Chr9:39622693 3.28E-126 dispersed
Lcy9g1459 Lcy-Chr9:39622693 Lcy3g2186 Lcy-Chr3:48777128 5.05E-110 dispersed
Lcy9g1459 Lcy-Chr9:39622693 Lcy3g2167 Lcy-Chr3:48561035 4.56E-236 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66204 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1459 - - - 0.0