Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1466 ATGATCCCTTTCAAGCAAGCATCCGTTGATGTCAGCTCCTCAATTTCTCAGGTAAAACTTATGACGTCAACTGTCGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGAGAATCTGAGGAAGGAATAGTTGTCCGGGAATTCTGTGCAAATGGGATCTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTCAAGAGGCCGAGTCTTCATTACGAGAAGGGTTATCTCTCAATTTTGAGGAAGCCCGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAAAGATTACAGCCTTGCATGTCTGAGAAGACGCCTCCAAAGAAGGGACGTTCGCGCCCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAATGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAGGGAATTCCTGATGGACAAGTGGAGGGTAGATTGCAAGAGACTGTCAATCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAATAATGAAAGTTGTGCTAGGATACAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGATGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGATGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGCTTATTGTGAAGAAGTGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGACAGAACAAAGTTGCCTTGAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTAGCAGCCTTATTACTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATAAGCAATTGTATAGGAGATGAAGAACATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCGTCCTCTGACTATGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTAGAGAGCAATAACTTAGATTTGATGCTCGAGTTAGGAGTACAGTATTCAGAATATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTTCATTGATGAAACTGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCGGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTTCTCAGACTCAAGGCCAAGCTGAAGATCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCGCTCAGAATCGTCCCCCAGGTTGAAGATGATAAACTGAATGAATTTGAAGTTTGGAATGGTCTGGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCCAAAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGCAAGATCTGA 1878 43.5 MIPFKQASVDVSSSISQVKLMTSTVDEDDREPAMESGESEEGIVVREFCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCMSEKTPPKKGRSRPESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVEGRLQETVNQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVDAGPPSLAVQLDGSYVPKNNLEEAILLLMLIVKKCYLGKIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAISNCIGDEEHLKGVGLRLLGLCLGKQAKMSSSDYERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPEVLHTEGKI 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39707058 39713972 + Maker00016136 Lcy9g1466 642582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1466 625 PANTHER PROTEIN NPG1 20 624 IPR043376 -
Lcy9g1466 625 Gene3D Tetratricopeptide repeat domain 263 625 IPR011990 GO:0005515(InterPro)
Lcy9g1466 625 SMART tpr_5 582 615 IPR019734 GO:0005515(InterPro)
Lcy9g1466 625 SMART tpr_5 336 369 IPR019734 GO:0005515(InterPro)
Lcy9g1466 625 SMART tpr_5 492 525 IPR019734 GO:0005515(InterPro)
Lcy9g1466 625 SUPERFAMILY TPR-like 64 288 IPR011990 GO:0005515(InterPro)
Lcy9g1466 625 SUPERFAMILY TPR-like 439 612 IPR011990 GO:0005515(InterPro)
Lcy9g1466 625 Gene3D Tetratricopeptide repeat domain 59 257 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2134 Lcy-Chr13:40265217 Lcy9g1466 Lcy-Chr9:39707058 1.30E-145 dispersed
Lcy9g1466 Lcy-Chr9:39707058 Lcy11g1685 Lcy-Chr11:40706887 9.30E-175 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1466 K21843 - csv:101206641 1133.63