Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1511 ATGCCCGGGCATCCCGAGATGCCTGGATATCTTACATTACCGCAAAACAAACGGGGTAATCCAAATGCCCATTCCATGGCGTTGTTTTCCTTCCAGCAGCTCGTTGTTACCAGATTACTATATGTTCAAGAAAACAATTCCAGTATTTGGTATCTCAGATGGTTTGTTGTAATCGGATTATGCTTGACTGGTGCCACCATGGGCTTCTATACGGTAAAATGGCAATGGCTACTGATTCTTCACATTGTACCGCTTTGCGTGATAATGAACAGAAGCAGTGGTATTAGTTCTGATGGCGAGGCACTTTTGAGCTTCAAAGCAGCAATTCTTGATTCTGATGGTGTTCTGCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTAGATGGAAAGGAGTAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTTATCACAAACTTAGTGGATCTTTATCCCCTGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCGCAGTTGCAGGGAGTAATACGGGGTACACCAAGCAAGGTCTTTAAGGATGTTAACTCTGTTAATTGGAGCACGAGGGACAGGTGGTTCCTTCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTGGGGAATCTTTCGGCACTTAAAAATTTAGATATTTCAAGTAACTCACTCGGTGGAAATATTCCCATCTCGCTTGGGAAGTTGAGCAAGCTTATTACTCTAAATGTGTCTGCCAATTTTCTGGTTGGATCAATACCGAATGTTGGCGTGCTAATCAATTTCTCGGAAAGCTCATTTCTTGGAAATCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAGGAGGGACCTGGAACAAACGAGTCACCATTCTCAGTGGAAAATCAAATTGGGCGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTCTAGTGCTGGACGTTTGTGGAGGTGCCTCGGGTGTAATGTTTCACGGAGACTTACCATACTCATCTAAAGATATTATTAAGAAATTTGAGTCATTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATATTTTTGCCTTGAAAAGAATTGTAAAATTAAATGAAGGCTTTGATCGTTTTTTTGAGAGAGAACTCGAAATCCTTGGAAGCATAAAGCACAGGTTCCTTGTCAATTTGCGAGGATATTGCAATTCGCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGTAAGATTCTTATTATATAA 1476 41.53 MPGHPEMPGYLTLPQNKRGNPNAHSMALFSFQQLVVTRLLYVQENNSSIWYLRWFVVIGLCLTGATMGFYTVKWQWLLILHIVPLCVIMNRSSGISSDGEALLSFKAAILDSDGVLLQWKPEEPHPCRWKGVTCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVIRGTPSKVFKDVNSVNWSTRDRWFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGKLSKLITLNVSANFLVGSIPNVGVLINFSESSFLGNRGLCGKQINVMCKDDKEGPGTNESPFSVENQIGRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASGVMFHGDLPYSSKDIIKKFESLNEEHIIGCGGFGTVYKLAMDDGNIFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGKILII 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40187294 40196869 + Maker00016540 Lcy9g1511 642627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1511 491 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Lcy9g1511 491 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Lcy9g1511 491 Pfam Protein kinase domain 401 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1511 491 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 373 474 - -
Lcy9g1511 491 ProSiteProfiles Protein kinase domain profile. 399 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1511 491 SUPERFAMILY Protein kinase-like (PK-like) 383 488 IPR011009 -
Lcy9g1511 491 ProSitePatterns Protein kinases ATP-binding region signature. 405 431 IPR017441 GO:0005524(InterPro)
Lcy9g1511 491 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 87 190 IPR050647 -
Lcy9g1511 491 Pfam Leucine rich repeat N-terminal domain 96 135 IPR013210 -
Lcy9g1511 491 SUPERFAMILY L domain-like 120 276 - -
Lcy9g1511 491 Gene3D Ribonuclease Inhibitor 95 305 IPR032675 -
Lcy9g1511 491 Gene3D Phosphorylase Kinase; domain 1 376 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1511 Lcy-Chr9:40187294 Lcy2g0596 Lcy-Chr2:5086586 5.75E-53 dispersed
Lcy9g1511 Lcy-Chr9:40187294 Lcy5g2283 Lcy-Chr5:45811634 7.18E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66205 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1511 - - - 0.0