Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1512 ATGATAGGTGTCCGTACTGAAGTATCTGAGCAACTGGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCTCCACGGATCATTCACCGAGACATAAAATCAAGCAATATTTTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGATTTTGGACTTGCGAAGCTTTTAGAGGATGAAGAATCACATATCACAACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGCAAACGCCCCACCGATGCGTCATTCATTGAGAAGGGGCTAAACATTGTTGGTTGGTTAAACTTTCTGGTCACAGAGAATCGACAACGAGAAATCGTTGACGCACAGTGTGAGGGCATGCAAACAGAGAGCCTCGACGCACTGCTTTCAGTTGCCATCCAATGTGTTTCGTCGAGTCCAGAGGATCGACCAACCATGCACAGGGTGGTCCAGATACTGGAATCTGAGGTTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 612 43.95 MIGVRTEVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDAQCEGMQTESLDALLSVAIQCVSSSPEDRPTMHRVVQILESEVMTPCPSDFYDTD 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40197344 40201606 + Maker00016450 Lcy9g1512 642628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1512 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1512 203 Gene3D Transferase(Phosphotransferase) domain 1 3 195 - -
Lcy9g1512 203 SUPERFAMILY Protein kinase-like (PK-like) 10 187 IPR011009 -
Lcy9g1512 203 SMART serkin_6 1 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1512 203 Pfam Protein kinase domain 19 185 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1512 203 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1512 203 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 189 IPR051564 GO:0005886(PANTHER)|GO:0016020(PANTHER)
Lcy9g1512 203 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 2 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1512 Lcy-Chr9:40197344 Lcy4g1762 Lcy-Chr4:43650739 2.73E-57 dispersed
Lcy9g1512 Lcy-Chr9:40197344 Lcy5g2283 Lcy-Chr5:45811634 2.32E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66206 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1512 - - - 0.0