Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1537 ATGGCGGCAGTGGTCGGAGGAGGTGGTGGTAACGGAGGCGGTTTGATGATCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTCCAAGTAATCAATGGAGGTTATCATGTTATCACCAAAGTCGCCCTCAATGTTGGGATGAACCAGCTCGTCTTTTGTCTCTTCCGCGACTTGTTGGCGCTCGCGATTCTTGCCCCTGTTGCTTATGTTCGTGAGAAACGGATTCGTTTGCCTATGACTAGAGACCTCCTCATATCGTTCTTCATTCTTGGTTTAACGGGGATTTTCGGTAACCAGCTTCTTTTTCTTGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACGTTCCTATTTGCTGTCATGATGGGCACAGAGACTGTGAATTTCCTCAAACTGGAAGGACAGGCAAAGGTTGGAGGTACACTCGTTTGTGTCTCTGGTGCCATATTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAACACTGAATCTGACTTCATGTTGCATAGTGAAATAAGTGCAAAGGGTCAGCCAGAGCCTGCTGGATGGCTATTGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTATTATGCTTGATTGGGAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGGCACGGGTGTTGAAGAAGTATCCTGCCAACTTATCGGTCACGGCATATTCTTATTTCTTTGGTGCTATATTGATGGTGATCACATCTTTCTTCATGACCAACGAATCCACAGACTGGAATTTAACGCAATCAGAGTTTTTTGCTGTCCTTTATGCTGGAATTTTTGCTTCTGCCATTAATTATGGACTCCTGACATGGTGCAATAAAATATTGGGGCCAGCGTTGGTCGCTCTTTACAACCCACTTCAACCTGCATTATCTGCGCTGTTGTCAAGAGTTTTTATAGGAAGCCCTATTTACCTAGGAAGTGTTATGGGGGGATCACTTATAATTGCTGGTCTTTATTTGGTTACTTGGGCATCGCATAGGGAACGGCAAGCAACTACAGTTTTGATACCTCATTCAACCAGGTCCTCCGAACCACTCATTCACAAAGATGCATTGACTAACAAGTTTGCATACCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTGTAGATTAG 1212 45.3 MAAVVGGGGGNGGGLMIGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILAPVAYVREKRIRLPMTRDLLISFFILGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNFLKLEGQAKVGGTLVCVSGAILMVLFRGPALVGNTESDFMLHSEISAKGQPEPAGWLLSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQARVLKKYPANLSVTAYSYFFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGIFASAINYGLLTWCNKILGPALVALYNPLQPALSALLSRVFIGSPIYLGSVMGGSLIIAGLYLVTWASHRERQATTVLIPHSTRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSVD 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40474473 40478878 + Maker00016353 Lcy9g1537 642653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1537 403 PANTHER WAT1-RELATED PROTEIN 27 364 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy9g1537 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 356 - -
Lcy9g1537 403 Pfam EamA-like transporter family 27 148 IPR000620 GO:0016020(InterPro)
Lcy9g1537 403 Pfam EamA-like transporter family 214 350 IPR000620 GO:0016020(InterPro)
Lcy9g1537 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0410 Lcy-Chr2:3422850 Lcy9g1537 Lcy-Chr9:40474473 4.76E-71 dispersed
Lcy9g1537 Lcy-Chr9:40474473 Lcy9g1576 Lcy-Chr9:40945254 2.51E-39 dispersed
Lcy9g1537 Lcy-Chr9:40474473 Lcy9g2233 Lcy-Chr9:46880346 1.60E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1537 - - - 0.0