Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1539 ATGGGAAGAGGAAAGATTGAAATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTGACATACTCAAAGAGAAGAAATGGGATAATCAAGAAGGCCAAAGAAATCACTGTTCTTTGTGATGCTCAAGTTTCTCTCGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGCAGCCCTTCTACACCGTTGGTTGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGACTGTGGGATGCTAAGCATGAGAATCTGAGCAACGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGCATTTGAGAGGAGAAGATATAACTTCTCTGAACTACAAGGAGCTAATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGTCGGAGTTCATCAAAATGATGAGGACAAATGAGAGAATGATGGAAGAAGAGAACAAGCGCCTCAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAGATGGATAATGGATATAATCAAAGAATGAGAGATTTCAATTCTCAGATGCCTTTTGCCTTCAGAGTGCAGCCCATTCAGCCAAATCTACAAGAAAGGATCTAA 636 41.04 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQSEFIKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40485123 40489411 - Maker00016409 Lcy9g1539 642655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1539 211 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy9g1539 211 Pfam K-box region 82 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy9g1539 211 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy9g1539 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 Coils Coil 77 111 - -
Lcy9g1539 211 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy9g1539 211 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy9g1539 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0395 Lcy-Chr6:3748462 Lcy9g1539 Lcy-Chr9:40485123 7.19E-21 dispersed
Lcy6g0403 Lcy-Chr6:3814021 Lcy9g1539 Lcy-Chr9:40485123 3.24E-26 dispersed
Lcy8g1617 Lcy-Chr8:42750420 Lcy9g1539 Lcy-Chr9:40485123 1.62E-21 dispersed
Lcy9g1539 Lcy-Chr9:40485123 Lcy9g2236 Lcy-Chr9:46915463 4.20E-41 dispersed
Lcy9g1539 Lcy-Chr9:40485123 Lcy3g0341 Lcy-Chr3:10647189 2.78E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20670 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1539 K09264 - csv:101222239 411.764