Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1541 | ATGCAGAAGCCGAAGCCATTTGCCGGAGCCAACGTATTCGTGTCTCGCAATCTTGTTGCTCCAGAGATATTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCCGAGGTCTTTCTCTGTTGCGATCCCTCTCGAAACGGGCCTAATGATTATCATGTTATCTCTTCCGCCGATCATGAAAAGTTCGAGGATCTTCGCGCGAAGGGGTGCAATTTGCTAGGTCCACAGTGCGTGCTTTCGTGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAGATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGGTTGAGATAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATTCGAAAGCATCTCTAGATGTCACCTTTGTCATCGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCACTGAATATTTCAAAGAAACCAATTGTCACAATTGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGCGTCCTTCCCTTTTCTGGATTGAATATTTCAGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAGAAAGTGTACACATTTGATTTCTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAATCCATAGCTAGAAGAGCATGTCTAAATGAGGAGTCATACCCTGTTGGTAGCATTTCTGGAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGAAAAGGTTACTGCGAACTTGCAAGTTGCACCATCCTCATTTATTGCCGATTCAAATTTCTCAGCAGTTTCTGGTCCTGGGTTTTCAGACATGGATTTAGAAGCTACGCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTGTAAATGAGGCTGATGTTGAAGTGCCAGTTCCAATGGCAAAGAACGAAGCAAACACTGATAATTGTGTTGCAAATGACTTCCAAGCTGAAGACAATGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGCAGGATTGTGAATATGATTCGCAGAGGTGGAGGCTCCCGATACATGCTGTTCAATGACAAGTTAACACACATAATAGTTGGAAATCCTTCGGAAATGGAGAAAAAGGAGGTAAGAGATATTGCAGCTTCAGGTGTTGTCCATGTGGTTAGAACCGCCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTGGCAGACATATGGCCTATGATGAACTTATTCCAAAAGCATCCAGTAAAACAAGCACCATCATCATGGATCAGAATAAAGTTCCTAATGTTCATCCAATCATGCCATCAAATGGGTTAGAAGGAAATATTCATGTTAGAATTGGAAAGACATCAATGATAGAGGAAAAAATTCAAGAAAAAAGTGAAGCAAATGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACCTTCTGCAGCAAATGCTAGAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCACTGTTCCAAATGGGAAGTCAACGTGTGTGTTTGAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAGGTTGTCGAGGATCATATGAAACAGAAAGTGCACTTCACTGTTGAGTGTCATGGTGAGACACCAAGGAGTGCAGATGTTCATACTACATACGATGGATGCTTGTGGGATACCAATGGCCACATTCTCTATTCTCCACTTCCTTGTCGTGTCCCTTTGCCTGGGTTTGAAAATAATCGGTTCTGTGTTTCACAATATGAAGATAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAATTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAATTACAGCTGAATGGATATATGAGTGCGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTAACTGCTCAAGACAGAGAGGCAGGCTTGTGCACTGTAAGTCAGTTTCCTACACAAGCTGTCCAAACGATAGCCAGTGAAAGTCAATCCCAGTTCCCTATCCATTCTGCTATCCTGAGAGACCAATCAGCAAGAACTAACGGTAGCTCTATGGGAGAAGTTGAACAATTAAGTTTAAGTAATAAAAAGCCCAAGTTCCTTGACGAAGCAAAACAAAAGCGTCCACCTTTTGTTGGAAATAGTCTCGCTCATTTTGACTGCAATGTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTAGGAGCTTCACATGTTCCTGATGTCGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAATTATTTTCCCGCCCGACTGTTCCATCATTGGTGAAGACCATTCAGAAGCTCATCCAATTAGTGGTTTATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAGGAAGATGTCAGCAATCCTACTAGTGGAGATGGGGGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCTTGACTTGA | 2874 | 42.62 | MQKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNLLGPQCVLSCAKEYRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVTAMGGVLHSKASLDVTFVIVKNVLAAKYKWALNISKKPIVTIAWLQQCWIEHRVVPQEGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLISPEGDKYKVARTWGHINIVTRKWFDQSIARRACLNEESYPVGSISGTSNKMARGCLTSHNSQEKVTANLQVAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFVNEADVEVPVPMAKNEANTDNCVANDFQAEDNDLYLSACRIKVVGFEASEMRRIVNMIRRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVVHVVRTAWLEDCDRQKKEIPVLGRHMAYDELIPKASSKTSTIIMDQNKVPNVHPIMPSNGLEGNIHVRIGKTSMIEEKIQEKSEANVSGDRTMKLSQKSQPSAANARNKSQEKMRRDFTVPNGKSTCVFEGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHMKQKVHFTVECHGETPRSADVHTTYDGCLWDTNGHILYSPLPCRVPLPGFENNRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDREAGLCTVSQFPTQAVQTIASESQSQFPIHSAILRDQSARTNGSSMGEVEQLSLSNKKPKFLDEAKQKRPPFVGNSLAHFDCNVNSTRETTSKSSVGASHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKIIFPPDCSIIGEDHSEAHPISGLSNQWLKRAERKEDVSNPTSGDGGAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLT | 957 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 40499475 | 40510399 | + | Maker00016593 | Lcy9g1541 | 642657 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1541 | 957 | SUPERFAMILY | BRCT domain | 565 | 612 | IPR036420 | - | |
| Lcy9g1541 | 957 | SUPERFAMILY | BRCT domain | 57 | 184 | IPR036420 | - | |
| Lcy9g1541 | 957 | ProSiteProfiles | BRCT domain profile. | 371 | 463 | IPR001357 | - | |
| Lcy9g1541 | 957 | SMART | BRCT_7 | 373 | 453 | IPR001357 | - | |
| Lcy9g1541 | 957 | SMART | BRCT_7 | 97 | 174 | IPR001357 | - | |
| Lcy9g1541 | 957 | SMART | BRCT_7 | 4 | 86 | IPR001357 | - | |
| Lcy9g1541 | 957 | SMART | BRCT_7 | 184 | 259 | IPR001357 | - | |
| Lcy9g1541 | 957 | SMART | BRCT_7 | 647 | 723 | IPR001357 | - | |
| Lcy9g1541 | 957 | ProSiteProfiles | BRCT domain profile. | 650 | 733 | IPR001357 | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 186 | 269 | IPR036420 | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 648 | 740 | IPR036420 | - | |
| Lcy9g1541 | 957 | ProSiteProfiles | BRCT domain profile. | 182 | 269 | IPR001357 | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 31 | 94 | IPR036420 | - | |
| Lcy9g1541 | 957 | SUPERFAMILY | BRCT domain | 646 | 734 | IPR036420 | - | |
| Lcy9g1541 | 957 | FunFam | Transcription coactivator | 97 | 185 | - | - | |
| Lcy9g1541 | 957 | CDD | BRCT | 103 | 170 | - | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 558 | 643 | IPR036420 | - | |
| Lcy9g1541 | 957 | SUPERFAMILY | BRCT domain | 373 | 457 | IPR036420 | - | |
| Lcy9g1541 | 957 | MobiDBLite | consensus disorder prediction | 519 | 554 | - | - | |
| Lcy9g1541 | 957 | FunFam | DNA topoisomerase II binding protein 1 | 187 | 277 | - | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 97 | 185 | IPR036420 | - | |
| Lcy9g1541 | 957 | FunFam | Transcription coactivator | 36 | 94 | - | - | |
| Lcy9g1541 | 957 | ProSiteProfiles | BRCT domain profile. | 100 | 184 | IPR001357 | - | |
| Lcy9g1541 | 957 | MobiDBLite | consensus disorder prediction | 526 | 545 | - | - | |
| Lcy9g1541 | 957 | SUPERFAMILY | BRCT domain | 186 | 270 | IPR036420 | - | |
| Lcy9g1541 | 957 | MobiDBLite | consensus disorder prediction | 904 | 932 | - | - | |
| Lcy9g1541 | 957 | Pfam | twin BRCT domain | 190 | 251 | IPR001357 | - | |
| Lcy9g1541 | 957 | Pfam | twin BRCT domain | 103 | 166 | IPR001357 | - | |
| Lcy9g1541 | 957 | Pfam | twin BRCT domain | 655 | 715 | IPR001357 | - | |
| Lcy9g1541 | 957 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 24 | 772 | - | GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER) | |
| Lcy9g1541 | 957 | CDD | BRCT_TopBP1_rpt2_like | 186 | 259 | - | - | |
| Lcy9g1541 | 957 | Gene3D | BRCT domain | 353 | 459 | IPR036420 | - | |
| Lcy9g1541 | 957 | CDD | BRCT_TopBP1_rpt3 | 370 | 454 | - | - | |
| Lcy9g1541 | 957 | CDD | BRCT_TopBP1_rpt2_like | 648 | 723 | - | - | |
| Lcy9g1541 | 957 | FunFam | Transcription coactivator | 353 | 463 | - | - | |
| Lcy9g1541 | 957 | Pfam | BRCA1 C Terminus (BRCT) domain | 376 | 449 | IPR001357 | - | |
| Lcy9g1541 | 957 | Pfam | BRCA1 C Terminus (BRCT) domain | 565 | 609 | IPR001357 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1528 | Lcy-Chr9:40390721 | Lcy9g1541 | Lcy-Chr9:40499475 | 2.68E-41 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1541 | K10728 | - | csv:101212525 | 1593.56 |