Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1544 ATGGCCCAAAGCCCACATAATCCTCCGAAAGTTTTCCTCTCTCCGACTGAGCGCGGGAAAAACAAAAACCCTATTATCGGCGCCGGAGAGAGTTGGATCAGTGGCTGTGGAGGGAAAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTCCTTACCAACACTCTCGAGACTGCTAGTTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGACTTTGCTGGTGTTGCAGTAAGCAGTGGCCAGCGCCAAGGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAATGAAGAAGGTCTAAATCTAGATGCAGAGGCCCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGGTTATACCTCGGAAGGTTGTTGATGCCCTTTTTGCTGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTCAACAATGTAATTGCTGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCGAGGATATGCAAGAAGTTGGCAGAAGCAGATAAGGTCACTCCTATCTATTTCCATTGTCTCGTGGATGGGGCGGATGAATATCTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTCTAAGTAGTATGCAACTGTAA 1092 45.7 MAQSPHNPPKVFLSPTERGKNKNPIIGAGESWISGCGGKEMAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQVIPRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADKVTPIYFHCLVDGADEYLQLLDVVSQTMQALSSMQL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40542873 40547532 - Maker00016700 Lcy9g1544 642660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1544 363 CDD HLD_clamp_RFC 214 258 IPR047854 -
Lcy9g1544 363 FunFam Replication factor C subunit 4 260 356 - -
Lcy9g1544 363 SUPERFAMILY post-AAA+ oligomerization domain-like 260 353 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lcy9g1544 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 49 358 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lcy9g1544 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 260 IPR027417 -
Lcy9g1544 363 Pfam ATPase family associated with various cellular activities (AAA) 85 213 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy9g1544 363 SMART AAA_5 81 214 IPR003593 GO:0016887(InterPro)
Lcy9g1544 363 Gene3D - 260 357 - -
Lcy9g1544 363 Gene3D - 43 213 IPR027417 -
Lcy9g1544 363 CDD AAA 66 206 - -
Lcy9g1544 363 FunFam Replication factor C subunit 5 43 214 - -
Lcy9g1544 363 MobiDBLite consensus disorder prediction 1 23 - -
Lcy9g1544 363 Pfam Replication factor C C-terminal domain 261 352 IPR013748 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1725 Lcy-Chr1:18185131 Lcy9g1544 Lcy-Chr9:40542873 3.67E-23 dispersed
Lcy6g1987 Lcy-Chr6:42308752 Lcy9g1544 Lcy-Chr9:40542873 2.03E-51 dispersed
Lcy9g1544 Lcy-Chr9:40542873 Lcy9g1548 Lcy-Chr9:40587413 1.86E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1544 K10755 - csv:101221224 577.785