Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1547 ATGTCGTCCCACCTCTTCTTCACCCTTCTCTCAATCCTCTTCGTCGTCTCTTCTTCTTCTTCTTCTCTCTGTCCCATAGACTTCAGCTACGTTCAAACCCTCCCGTGGGACACCGCCCCCTGCCGCGGCCCAAACGACGCCGTTGGCCACTGCTGTCAGACCCTTCTCAGCCTCTTCGGCATCGGCTTAGCCCAACACCTCAAAGAAACTTCCCTCTTCGACCTCACGAATTCCACTTCCTCTTCCTCCTGCCTCTCCTCTTTCCAATCCAAGCTCTCTTCAATGGCGCTTCCTCCTTCCCTCGTCCCCAATTGCTTCCAAAACCCATCTCAATTCGTCGCCAATTCCTCCAACTGCGCCGGAATTTCCACCACCCACGATTGGGTCTCTAAAGTCGGCTCTGCAACTCCCCTCGACGCCGCGTGCGGCGGCGACTTGACCGGACTGACCCACTGCGGCGCCTGTGTCGACGCCGGCATGAAACTCACCTCTCGGCTAATGGCTCTCGACCCAAATGGAACCAAGTGCTTTTACTTCACCGTTCTTTACGCTGCTGGAATCGCCAACGAATTGGGTCCTAAAGACACCAGAGTCGCTTCTTGTATCATGGGGTTGCCATTGAAGGCCTCGGATAGTTACAGAGCAACCCATGTGAGCAGAAGGGCTCTAATGGCGGTGGGCTTTGGATTTACAGTCGTTCTCGTTACATTTCTCGTTGTAACTCCGGTTTTGGTTCTGAGATCCAAGAAGAAACGGCTCAAAAGACAAGAACAAGAACAGAAACTCCCCAATTTGGGGGCGAAATGGTTCGGTATAACAGAGCTCGAAAAGGCCACTAATGGATTCTCTCAGAGGAATCTAATCGGCCAAGGCGCAGATGGGTTCGTTTACAAAGGGAAACTTTCAGATGGAAGTTCAGTGGCAGTGAAACAAATCATCGATTCGGATTCAGAAAGGGATGAAGATTTCACCAACGAAGTCGAAATCATCAGCAAAATTAGACATAGAAATCTCCTTTCTCTTCGAGGCTGCTGCATCGCAAACGATCCCAATTTCAAATCCCAAAAGAGGAAATTCTTAGTCTACGATTTCATGCCGAACGGCAATCTCAGCGACCGTCTCTTCAGCAAGAACAACAGAATCCCATTGACATGGCCGCAAAGAAAAGCCATAATTCTGGACATAGCAAGAGGATTGAATTACCTGCATTACGGAATCAAACCCGCGATTTACCACCGCGACATCAAGCCCACCAACATCCTTCTGGACTCGGACTCGCGGGCCAGACTCGCGGATTTCGGCTTGGCGAAGCAGAGTAAAGAAGGGCAGTCGCATTTGACGACGAGGGTCGCCGGAACTCATGGGTACTTGGCGCCGGAGTACGGGCTGTACGGGCAGCTGACCGAGAAGAGCGACGTGTACAGTTTTGGGATAGTGATTTTGGAGATGATGAGTGGGAGGAGAGTGCTGGAGAGTTGGGATTTGATTACGGACTGGGCTTGGAAGCTGGTGAAGTCGGGGGACGTGGAAGCGATTTTGGAGGAAGCGATTAGAGAAGGAGGAGGGGCAAAATTGGTAATGGAGAGATTTGTTAATGTGGGCCTGCTTTGTGCTCATGTGAATGTGGGCTTTAGGCCCACGATTGATGAAGCTTTGAAGATGCTGGAAGGGGATATTGAAATTCCACAATTACCAGAACGCCCTTTGCCATTTTCTCATCATTCCTTCAAGGTTTCTTTGCAATTTGGCTCTTCTTCTTCTTCTTCTCACATTTCAACACCCCACTATCCCATTTAA 1797 50.36 MSSHLFFTLLSILFVVSSSSSSLCPIDFSYVQTLPWDTAPCRGPNDAVGHCCQTLLSLFGIGLAQHLKETSLFDLTNSTSSSSCLSSFQSKLSSMALPPSLVPNCFQNPSQFVANSSNCAGISTTHDWVSKVGSATPLDAACGGDLTGLTHCGACVDAGMKLTSRLMALDPNGTKCFYFTVLYAAGIANELGPKDTRVASCIMGLPLKASDSYRATHVSRRALMAVGFGFTVVLVTFLVVTPVLVLRSKKKRLKRQEQEQKLPNLGAKWFGITELEKATNGFSQRNLIGQGADGFVYKGKLSDGSSVAVKQIIDSDSERDEDFTNEVEIISKIRHRNLLSLRGCCIANDPNFKSQKRKFLVYDFMPNGNLSDRLFSKNNRIPLTWPQRKAIILDIARGLNYLHYGIKPAIYHRDIKPTNILLDSDSRARLADFGLAKQSKEGQSHLTTRVAGTHGYLAPEYGLYGQLTEKSDVYSFGIVILEMMSGRRVLESWDLITDWAWKLVKSGDVEAILEEAIREGGGAKLVMERFVNVGLLCAHVNVGFRPTIDEALKMLEGDIEIPQLPERPLPFSHHSFKVSLQFGSSSSSSHISTPHYPI 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40584577 40586373 + Maker00016732 Lcy9g1547 642663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1547 598 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 365 563 - -
Lcy9g1547 598 Pfam SPARK 19 177 IPR043891 -
Lcy9g1547 598 SMART serkin_6 282 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1547 598 CDD STKc_IRAK 288 557 - -
Lcy9g1547 598 Gene3D Transferase(Phosphotransferase) domain 1 365 562 - -
Lcy9g1547 598 ProSiteProfiles Protein kinase domain profile. 282 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1547 598 Pfam Protein kinase domain 284 494 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1547 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1547 598 FunFam Receptor-like serine/threonine-protein kinase At4g25390 247 364 - -
Lcy9g1547 598 PANTHER OS01G0750732 PROTEIN 34 576 IPR050885 -
Lcy9g1547 598 Gene3D Phosphorylase Kinase; domain 1 243 364 - -
Lcy9g1547 598 SUPERFAMILY Protein kinase-like (PK-like) 263 556 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1650 Lcy-Chr3:43729443 Lcy9g1547 Lcy-Chr9:40584577 4.39E-105 dispersed
Lcy6g0566 Lcy-Chr6:5368472 Lcy9g1547 Lcy-Chr9:40584577 1.46E-208 dispersed
Lcy9g1547 Lcy-Chr9:40584577 Lcy5g1798 Lcy-Chr5:40718351 2.84E-68 dispersed
Lcy9g1547 Lcy-Chr9:40584577 Lcy8g0911 Lcy-Chr8:32722906 1.83E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66207 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1547 - - - 0.0