Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1554 ATGTCGGAGACGGAGGTGTTCGACGCGGCGGAGCTGGTCAAGGAACTGAGAGGAAGTTTTGCCTCCGGCAAGACTCGGAGCTATGAGTGGAGAGTGTCGCAGCTTGAGTGTATCATGAAGCTCAGCGTTGACCACGAGGAAGATATCTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGTGTTGGAATCCATCCTTCACGAGATAGCTTTGTTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAAGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTCGGTGTTGTCTTGATCATTTCTGCTTGGAATTATCCATTCTTATTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCTGAAATTTCCCCAGCAACATCATCTTTAATGGCAAAACTTCTAGGGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTGCTGAAACTTCTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACACCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAATAGTTGATTCAAAAATCAATTTACAAGTTGCGAGTAGGCGGATTATTGTTGGTAAGTGGGGTTGTAACAATGGGCAAGCATGCATTGCACCTGATTATATCATAACGACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGGTTTTATGGAAAGAATCCGTTCGAATCTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTTGCTCGCTTGTCAAAGCTCTTAGACGATGATAAAGTTTCTGGCAAGATTGTGCATGGAGGTGAAAAGGACAAAGACAAATTACAGATTACTCCGACCCTCTTATTGGATGTCCCTCGAGACTCTCTGATTATGACAGAGGAGATCTTTGGTCCCTTACTTCCCATTCTCACGGTCGACAAACTGGAGGACAGTTTCGAAGTAGTGAACTCGGGCACAAAGCCACTTGCAGCATATCTATTTACCAACAACAAAAGGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGATACGTCCTTACATCTTGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTCTCTTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTACCGAAGTTTTGCAGGCGACGCGCCGATGAGATACCCGCCGTACACAAAGGGAAAGCTGAGAATTCTCAAGGCTATTCTTGGAGGTGACATATGGGGACTCATTCGTGCTCTTCTTGGATTGTCATAA 1446 44.67 MSETEVFDAAELVKELRGSFASGKTRSYEWRVSQLECIMKLSVDHEEDICDALRSDLSKPVLESILHEIALLKGSCKLALKELKRWMAPEKVKTSITTFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPATSSLMAKLLGKYLDTSAVKVVEGAVAETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVIVDSKINLQVASRRIIVGKWGCNNGQACIAPDYIITTKEFAPKLVESLKQELERFYGKNPFESKDLSRIVNANHFARLSKLLDDDKVSGKIVHGGEKDKDKLQITPTLLLDVPRDSLIMTEEIFGPLLPILTVDKLEDSFEVVNSGTKPLAAYLFTNNKRLKEQFVACISAGGVAINDTSLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKAILGGDIWGLIRALLGLS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40668440 40675078 - Maker00017050 Lcy9g1554 642670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1554 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 214 221 IPR029510 GO:0016491(InterPro)
Lcy9g1554 481 CDD ALDH_F3FHI 9 440 - -
Lcy9g1554 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 436 IPR016162 GO:0016491(InterPro)
Lcy9g1554 481 SUPERFAMILY ALDH-like 8 454 IPR016161 GO:0016491(InterPro)
Lcy9g1554 481 Pfam Aldehyde dehydrogenase family 9 438 IPR015590 GO:0016491(InterPro)
Lcy9g1554 481 PIRSF ALDH 1 475 IPR012394 GO:0006081(InterPro)
Lcy9g1554 481 PANTHER ALDEHYDE DEHYDROGENASE 9 478 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Lcy9g1554 481 FunFam Aldehyde dehydrogenase 17 221 - -
Lcy9g1554 481 FunFam Aldehyde dehydrogenase 218 418 - -
Lcy9g1554 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 218 418 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2098 Lcy-Chr8:47168691 Lcy9g1554 Lcy-Chr9:40668440 6.13E-154 dispersed
Lcy9g1554 Lcy-Chr9:40668440 Lcy9g1555 Lcy-Chr9:40675313 1.02E-14 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1554 K00128 - csv:101219329 814.683