Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1554 ATGTCGGAGACGGAGGTGTTCGACGCGGCGGAGCTGGTCAAGGAACTGAGAGGAAGTTTTGCCTCCGGCAAGACTCGGAGCTATGAGTGGAGAGTGTCGCAGCTTGAGTGTATCATGAAGCTCAGCGTTGACCACGAGGAAGATATCTGCGATGCGCTTCGCTCTGACCTCTCCAAGCCTGTGTTGGAATCCATCCTTCACGAGATAGCTTTGTTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAAGCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGCTGCAATTGTACCAGAACCTTTCGGTGTTGTCTTGATCATTTCTGCTTGGAATTATCCATTCTTATTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCTGAAATTTCCCCAGCAACATCATCTTTAATGGCAAAACTTCTAGGGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTGCTGAAACTTCTGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACACCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTAATAGTTGATTCAAAAATCAATTTACAAGTTGCGAGTAGGCGGATTATTGTTGGTAAGTGGGGTTGTAACAATGGGCAAGCATGCATTGCACCTGATTATATCATAACGACGAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAACAAGAACTGGAGAGGTTTTATGGAAAGAATCCGTTCGAATCTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTTGCTCGCTTGTCAAAGCTCTTAGACGATGATAAAGTTTCTGGCAAGATTGTGCATGGAGGTGAAAAGGACAAAGACAAATTACAGATTACTCCGACCCTCTTATTGGATGTCCCTCGAGACTCTCTGATTATGACAGAGGAGATCTTTGGTCCCTTACTTCCCATTCTCACGGTCGACAAACTGGAGGACAGTTTCGAAGTAGTGAACTCGGGCACAAAGCCACTTGCAGCATATCTATTTACCAACAACAAAAGGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGGGGTGTGGCCATCAATGATACGTCCTTACATCTTGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTCTCTTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTACCGAAGTTTTGCAGGCGACGCGCCGATGAGATACCCGCCGTACACAAAGGGAAAGCTGAGAATTCTCAAGGCTATTCTTGGAGGTGACATATGGGGACTCATTCGTGCTCTTCTTGGATTGTCATAA 1446 44.67 MSETEVFDAAELVKELRGSFASGKTRSYEWRVSQLECIMKLSVDHEEDICDALRSDLSKPVLESILHEIALLKGSCKLALKELKRWMAPEKVKTSITTFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPATSSLMAKLLGKYLDTSAVKVVEGAVAETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVIVDSKINLQVASRRIIVGKWGCNNGQACIAPDYIITTKEFAPKLVESLKQELERFYGKNPFESKDLSRIVNANHFARLSKLLDDDKVSGKIVHGGEKDKDKLQITPTLLLDVPRDSLIMTEEIFGPLLPILTVDKLEDSFEVVNSGTKPLAAYLFTNNKRLKEQFVACISAGGVAINDTSLHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKAILGGDIWGLIRALLGLS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40668440 40675078 - Maker00017050 Lcy9g1554 642670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1554 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 214 221 IPR029510 GO:0016491(InterPro)
Lcy9g1554 481 CDD ALDH_F3FHI 9 440 - -
Lcy9g1554 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 436 IPR016162 GO:0016491(InterPro)
Lcy9g1554 481 SUPERFAMILY ALDH-like 8 454 IPR016161 GO:0016491(InterPro)
Lcy9g1554 481 Pfam Aldehyde dehydrogenase family 9 438 IPR015590 GO:0016491(InterPro)
Lcy9g1554 481 PIRSF ALDH 1 475 IPR012394 GO:0006081(InterPro)
Lcy9g1554 481 PANTHER ALDEHYDE DEHYDROGENASE 9 478 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Lcy9g1554 481 FunFam Aldehyde dehydrogenase 17 221 - -
Lcy9g1554 481 FunFam Aldehyde dehydrogenase 218 418 - -
Lcy9g1554 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 218 418 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1554 K00128 - - csv:101219329 814.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g2098 Lcy-Chr8:47168691 Lcy9g1554 Lcy-Chr9:40668440 6.13E-154 dispersed
Lcy9g1554 Lcy-Chr9:40668440 Lcy9g1555 Lcy-Chr9:40675313 1.02E-14 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0806 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 7.4e-208 720.7
Lcy13g1208 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 5.2e-161 565.1
Lcy2g0648 . 66 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 7.3e-155 544.7
Lcy2g0648 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 78.9 6.4e-258 887.1
Lcy13g1208 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.6 1.4e-249 859.4
Lcy2g0806 . 18 533 Aldehyde Dehydrogenase Gene Family AT3G48000 52.2 4.9e-157 552.0
Lcy13g1208 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 78.2 5.9e-171 597.8
Lcy2g0648 . 1 394 Aldehyde Dehydrogenase Gene Family AT1G23800 73.4 1.4e-167 586.6
Lcy2g0806 . 18 377 Aldehyde Dehydrogenase Gene Family AT1G23800 50.6 7.1e-100 361.7
Lcy9g1554 . 8 481 Aldehyde Dehydrogenase Gene Family AT4G34240 66.0 9.7e-182 634.0
Lcy6g0946 . 6 480 Aldehyde Dehydrogenase Gene Family AT4G34240 50.3 2.3e-130 463.4
Lcy9g1554 . 69 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.4 1.1e-180 630.2
Lcy6g0946 . 64 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 4.6e-118 422.2
Lcy8g2098 . 65 481 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 2.8e-115 412.9
Lcy6g0946 . 1 481 Aldehyde Dehydrogenase Gene Family AT4G36250 63.4 6.5e-185 644.4
Lcy8g2098 . 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 7.5e-157 551.2
Lcy8g1656 . 36 740 Aldehyde Dehydrogenase Gene Family AT1G79440 53.9 9.2e-201 697.2
Lcy1g0843 . 28 515 Aldehyde Dehydrogenase Gene Family AT2G14170 62.9 5.0e-179 625.2
Lcy4g0106 . 1 248 Aldehyde Dehydrogenase Gene Family AT2G14170 71.6 7.4e-114 408.7
Lcy2g0624 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 2.4e-251 865.1
Lcy2g0624 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 4.3e-256 880.9
Lcy4g2026 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.0e-266 913.7
Lcy5g2290 . 88 625 Aldehyde Dehydrogenase Gene Family AT5G62530 78.5 2.3e-258 888.6
Lcy12g0802 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.5e-276 949.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56