Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1560 ATGGGGTTGAACAGTAGAGCTGAAGATCGGGCAGAATCGCAGGAAGAATGTTTTCATGTATTGGCTGTGGATGATAATCTCATTGACAGAAAGCTGCTCGAGAGGCTTCTCAAATGTTCTTCCTATCATGTGACCTGCGTAGAATCTGGAGATAAAGCTTTGAAATATTTGGGAGTGTACGACGAGGCGTCGTCGGAGAAGAGCAGCCATTGTTATGAAGCTGCTAATTACAATTCTTCTTCATCGTCACAAGAAAGATTGAAAGTAAACTTAATCATGACGGACTTTTCCATGCCTGGAATGAGCGGTTATGATTTACTCAAACGTCTTAAGAAATCACGTTGGAAAGACGTACCAGTAGTGGTGATGTCATCTGAAAACGTACCTTCAAGAATTAACATGTGTTTGGAAGGAGGTGCTGAAGAATTCCTTTTGAAGCCTCTTCAACTATCCGATTTGAACAAAATTGAACCTCATCTTCTCAAATCATCTCATCGAGAATTCGCAGACATTGCACAAAATTTCAACGTAAACATCGACAACAATAACAATACTATTGCCAAGAGATCGAAGCCCACAAAAAATGACGGTTGCATTACTTTGTGA 606 40.26 MGLNSRAEDRAESQEECFHVLAVDDNLIDRKLLERLLKCSSYHVTCVESGDKALKYLGVYDEASSEKSSHCYEAANYNSSSSSQERLKVNLIMTDFSMPGMSGYDLLKRLKKSRWKDVPVVVMSSENVPSRINMCLEGGAEEFLLKPLQLSDLNKIEPHLLKSSHREFADIAQNFNVNIDNNNNTIAKRSKPTKNDGCITL 201
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 40729183 40731895 - Maker00016214 Lcy9g1560 642676
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1560 201 ProSiteProfiles Response regulatory domain profile. 19 161 IPR001789 GO:0000160(InterPro)
Lcy9g1560 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 182 IPR045279 GO:0009736(InterPro)
Lcy9g1560 201 SUPERFAMILY CheY-like 19 163 IPR011006 -
Lcy9g1560 201 Pfam Response regulator receiver domain 71 155 IPR001789 GO:0000160(InterPro)
Lcy9g1560 201 Gene3D - 19 190 - -
Lcy9g1560 201 SMART REC_2 18 157 IPR001789 GO:0000160(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0695 Lcy-Chr7:6447304 Lcy9g1560 Lcy-Chr9:40729183 1.43E-48 dispersed
Lcy7g1085 Lcy-Chr7:11632265 Lcy9g1560 Lcy-Chr9:40729183 2.63E-23 dispersed
Lcy10g1232 Lcy-Chr10:35001365 Lcy9g1560 Lcy-Chr9:40729183 2.27E-61 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20672 None None None None Lcy TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1560 K14492 - vvi:100259216 222.246