Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1560 | ATGGGGTTGAACAGTAGAGCTGAAGATCGGGCAGAATCGCAGGAAGAATGTTTTCATGTATTGGCTGTGGATGATAATCTCATTGACAGAAAGCTGCTCGAGAGGCTTCTCAAATGTTCTTCCTATCATGTGACCTGCGTAGAATCTGGAGATAAAGCTTTGAAATATTTGGGAGTGTACGACGAGGCGTCGTCGGAGAAGAGCAGCCATTGTTATGAAGCTGCTAATTACAATTCTTCTTCATCGTCACAAGAAAGATTGAAAGTAAACTTAATCATGACGGACTTTTCCATGCCTGGAATGAGCGGTTATGATTTACTCAAACGTCTTAAGAAATCACGTTGGAAAGACGTACCAGTAGTGGTGATGTCATCTGAAAACGTACCTTCAAGAATTAACATGTGTTTGGAAGGAGGTGCTGAAGAATTCCTTTTGAAGCCTCTTCAACTATCCGATTTGAACAAAATTGAACCTCATCTTCTCAAATCATCTCATCGAGAATTCGCAGACATTGCACAAAATTTCAACGTAAACATCGACAACAATAACAATACTATTGCCAAGAGATCGAAGCCCACAAAAAATGACGGTTGCATTACTTTGTGA | 606 | 40.26 | MGLNSRAEDRAESQEECFHVLAVDDNLIDRKLLERLLKCSSYHVTCVESGDKALKYLGVYDEASSEKSSHCYEAANYNSSSSSQERLKVNLIMTDFSMPGMSGYDLLKRLKKSRWKDVPVVVMSSENVPSRINMCLEGGAEEFLLKPLQLSDLNKIEPHLLKSSHREFADIAQNFNVNIDNNNNTIAKRSKPTKNDGCITL | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40729183 | 40731895 | - | Maker00016214 | Lcy9g1560 | 642676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1560 | 201 | ProSiteProfiles | Response regulatory domain profile. | 19 | 161 | IPR001789 | GO:0000160(InterPro) | |
Lcy9g1560 | 201 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 12 | 182 | IPR045279 | GO:0009736(InterPro) | |
Lcy9g1560 | 201 | SUPERFAMILY | CheY-like | 19 | 163 | IPR011006 | - | |
Lcy9g1560 | 201 | Pfam | Response regulator receiver domain | 71 | 155 | IPR001789 | GO:0000160(InterPro) | |
Lcy9g1560 | 201 | Gene3D | - | 19 | 190 | - | - | |
Lcy9g1560 | 201 | SMART | REC_2 | 18 | 157 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy7g0695 | Lcy-Chr7:6447304 | Lcy9g1560 | Lcy-Chr9:40729183 | 1.43E-48 | dispersed | |
Lcy7g1085 | Lcy-Chr7:11632265 | Lcy9g1560 | Lcy-Chr9:40729183 | 2.63E-23 | dispersed | |
Lcy10g1232 | Lcy-Chr10:35001365 | Lcy9g1560 | Lcy-Chr9:40729183 | 2.27E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20672 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1560 | K14492 | - | vvi:100259216 | 222.246 |