Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1569 | ATGACAGGACGAGATTTGGTCGATCATGTGGTCGATCGGAGTGGATCGTATGCTCACACGATTATTCAGTTGAAGTGGCAGTATAATGATACTGGTGCCAATAATTTAACTTTTACAGGCATGGGTGCTGCTTACGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGGTTGATCATCGCTGTTATTATTAGTACCGGAATAAACCCAAAAGCAAAGTCTTACTATTTGTTTGATGGGTATGCACATCTATCTTCTGGACTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCGATCGGGATTGTTGGTGATGCTGGTGTTCGGGCCAATGCACAACAACCTAAGCTCTTCGTTGGAATGATTCTTATTCTCATCTTTGCTGAAGCACTTGCCCTCTACGGTCTTATTGTTGGAATCATTCTCTCTTCTCGGGCGGGCCAATCTCGTGCAGATTAA | 537 | 45.44 | MTGRDLVDHVVDRSGSYAHTIIQLKWQYNDTGANNLTFTGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40895767 | 40898567 | + | Maker00016384 | Lcy9g1569 | 642685 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1569 | 178 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 102 | 169 | - | - | |
Lcy9g1569 | 178 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 36 | 93 | - | - | |
Lcy9g1569 | 178 | Pfam | ATP synthase subunit C | 38 | 89 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | Pfam | ATP synthase subunit C | 110 | 168 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | SUPERFAMILY | F1F0 ATP synthase subunit C | 100 | 169 | IPR035921 | - | |
Lcy9g1569 | 178 | Gene3D | - | 32 | 175 | IPR035921 | - | |
Lcy9g1569 | 178 | NCBIfam | V-type ATPase subunit C | 33 | 134 | IPR011555 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 34 | 172 | - | GO:0016021(PANTHER) | |
Lcy9g1569 | 178 | FunFam | V-type proton ATPase proteolipid subunit | 28 | 175 | - | - | |
Lcy9g1569 | 178 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 120 | 146 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 147 | 170 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 69 | 93 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Lcy9g1569 | 178 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 43 | 67 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1930 | Lcy-Chr13:38308102 | Lcy9g1569 | Lcy-Chr9:40895767 | 2.13E-78 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1569 | K02155 | - | csv:101209079 | 244.202 |