Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1569 ATGACAGGACGAGATTTGGTCGATCATGTGGTCGATCGGAGTGGATCGTATGCTCACACGATTATTCAGTTGAAGTGGCAGTATAATGATACTGGTGCCAATAATTTAACTTTTACAGGCATGGGTGCTGCTTACGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGCGGCCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGGTTGATCATCGCTGTTATTATTAGTACCGGAATAAACCCAAAAGCAAAGTCTTACTATTTGTTTGATGGGTATGCACATCTATCTTCTGGACTTGCTTGTGGACTTGCTGGTCTCTCTGCTGGAATGGCGATCGGGATTGTTGGTGATGCTGGTGTTCGGGCCAATGCACAACAACCTAAGCTCTTCGTTGGAATGATTCTTATTCTCATCTTTGCTGAAGCACTTGCCCTCTACGGTCTTATTGTTGGAATCATTCTCTCTTCTCGGGCGGGCCAATCTCGTGCAGATTAA 537 45.44 MTGRDLVDHVVDRSGSYAHTIIQLKWQYNDTGANNLTFTGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40895767 40898567 + Maker00016384 Lcy9g1569 642685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1569 178 CDD ATP-synt_Vo_c_ATP6C_rpt2 102 169 - -
Lcy9g1569 178 CDD ATP-synt_Vo_c_ATP6C_rpt1 36 93 - -
Lcy9g1569 178 Pfam ATP synthase subunit C 38 89 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 Pfam ATP synthase subunit C 110 168 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 SUPERFAMILY F1F0 ATP synthase subunit C 100 169 IPR035921 -
Lcy9g1569 178 Gene3D - 32 175 IPR035921 -
Lcy9g1569 178 NCBIfam V-type ATPase subunit C 33 134 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 34 172 - GO:0016021(PANTHER)
Lcy9g1569 178 FunFam V-type proton ATPase proteolipid subunit 28 175 - -
Lcy9g1569 178 PRINTS Vacuolar ATP synthase 16kDa subunit signature 120 146 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 PRINTS Vacuolar ATP synthase 16kDa subunit signature 147 170 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 PRINTS Vacuolar ATP synthase 16kDa subunit signature 69 93 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy9g1569 178 PRINTS Vacuolar ATP synthase 16kDa subunit signature 43 67 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1930 Lcy-Chr13:38308102 Lcy9g1569 Lcy-Chr9:40895767 2.13E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1569 K02155 - csv:101209079 244.202