Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1576 ATGGGAGCTGAAACTGGGCTTGCAATGTTTTGTGGAATGCTTCATAAAATAAAACCCTACTTGGCTATGATCTCCTTGCAATTTGGATATGCAGGGATGTATATTGTCACTATGCTTTGTCTTAAGAAGGGCATGAACCATTACGTTCTTGCCGTGTATCGACACGTCGTTGCCACCATTGTCATCTCCCCCTTCGCTCTCGTCCTCGAAAGGCCTGTGCTGGATCAAAATCTATACTACGTGGGGTTGAAACTTACCTCAGCAACATTTACATCTGTCACCATCAATATTCTCCCTGCTGTAACTTTCATCATGGCTCTCATTTTCAGACTGGAAAGTGTGAACTTCAAGAAGATTCGTAGCATTGCAAAGGTGCTAGGAACATTGGTGACGATCGGCGGAGCAATGGTAATGACTCTATACAAAGGACCGATCGTCGACATCTTCCACGGCCACGGACGCCACGCCGCCCACCACAGCAGCAGCGAGTCCGCCGACCAGCACTGGGTCCTCGGCACCCTCATGCTCCTAGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACACTGAGGAAGTACCCGGCGGAGTTGTCGTTGACCGCCCTGATATGCTTGGCCGGCACGGTGGAGGGCTCCATTGTGACGCTTATTATGGAGCGTGACTTTAGCGTGTGGGTCATCGGCTGGGACTCTCGTCTTCTTGCAGCTGTTTATACTGGTGTGATATGTTCTGGGCTTGCTTATTACATACAAGGCGTGGTGATTCGGCAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACAGCCATCCTTGGCTCCATTGTTTTGGCTGAGCAAATTCACCTTGGAAGCATAATCGGAGCCATCTTCATAGTGATGGGGCTATACTTGGTGGTGTGGGGCAAAGCCAAAGACCATCTAAACAAATTAACGAATCCAAAAGGCGGCGCCGCCACCGAATTGCCGATCACCGCCGGCGCCACCGAGCCGGCAACCGGCGCCGCCGACGAGCGTTGCTCTACCAAGGCTCCACCGGCGTGA 1071 51.54 MGAETGLAMFCGMLHKIKPYLAMISLQFGYAGMYIVTMLCLKKGMNHYVLAVYRHVVATIVISPFALVLERPVLDQNLYYVGLKLTSATFTSVTINILPAVTFIMALIFRLESVNFKKIRSIAKVLGTLVTIGGAMVMTLYKGPIVDIFHGHGRHAAHHSSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLRKYPAELSLTALICLAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRQRGPVFVTSFTPLCMIITAILGSIVLAEQIHLGSIIGAIFIVMGLYLVVWGKAKDHLNKLTNPKGGAATELPITAGATEPATGAADERCSTKAPPA 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40945254 40948896 - Maker00016578 Lcy9g1576 642692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1576 356 Pfam EamA-like transporter family 171 309 IPR000620 GO:0016020(InterPro)
Lcy9g1576 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 313 - -
Lcy9g1576 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 142 - -
Lcy9g1576 356 PANTHER WAT1-RELATED PROTEIN 21 319 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0801 Lcy-Chr10:24379143 Lcy9g1576 Lcy-Chr9:40945254 1.61E-35 dispersed
Lcy10g1215 Lcy-Chr10:34805082 Lcy9g1576 Lcy-Chr9:40945254 1.75E-89 dispersed
Lcy12g1475 Lcy-Chr12:33563026 Lcy9g1576 Lcy-Chr9:40945254 1.77E-65 dispersed
Lcy12g1476 Lcy-Chr12:33618223 Lcy9g1576 Lcy-Chr9:40945254 3.27E-53 dispersed
Lcy7g0734 Lcy-Chr7:7054917 Lcy9g1576 Lcy-Chr9:40945254 1.40E-105 dispersed
Lcy7g0870 Lcy-Chr7:8678754 Lcy9g1576 Lcy-Chr9:40945254 4.31E-96 dispersed
Lcy7g0874 Lcy-Chr7:8717703 Lcy9g1576 Lcy-Chr9:40945254 1.68E-99 dispersed
Lcy8g0228 Lcy-Chr8:5928072 Lcy9g1576 Lcy-Chr9:40945254 2.23E-66 dispersed
Lcy9g1537 Lcy-Chr9:40474473 Lcy9g1576 Lcy-Chr9:40945254 2.51E-39 dispersed
Lcy9g1576 Lcy-Chr9:40945254 Lcy13g1039 Lcy-Chr13:22711472 9.20E-18 dispersed
Lcy10g1214 Lcy-Chr10:34795201 Lcy9g1576 Lcy-Chr9:40945254 5.57E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1576 - - - 0.0