Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1599 | ATGGCAGCTGCCATGGATTTCTACAGTGAAGGAACTCAAACTGACCACTTCGGTGGAGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCCTCTCTCTCTACAAATTTCCTTTCTTCTTCTTCTTCTTCTTCTTCACCAACACCTTCTCTTCCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCAGTCAGCCCCTCAACAGTCCACTTTGTACTCAAATGGATGCTCCACTTCGATGAACCCAGGATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCCGTTATCTTCACCTCAAATCCTCCATTCCCAGCCTCAGATCAATCTTCTTCAGAACCAAACCCCTGTAGCTTTTGCATGGGGGCAACAGAACCATCAACCACATCAGCCATCACTGTGCTATGAGCAACAAGCGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGCTTCGTCTTCAAAACCCACCAAGCTTTACAGAGGGGTTAGGCAACGGCATTGGGGGAAATGGGTGGCCGAGATCCGACTACCGAGGAACCGAACTCGACTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTTAATTTCCCCCACCTTAAGCACCAAGGCTCCTGCATTGAAGGCGAATTCGGCGAGTTTAGGCCTCTACATTCCTCAGTTGATGCAAAACTCCAAGCAATTTGTGATAACCTGGCCAAGCCACAGAAACAAGGCAACTCTAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCACGGCGGCAGAAACGGCAGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTGACAGAGAGTGACGGGTCTGCAGCGTCTTCACCTTTATCGGATCTTACATTCCCCGACTTCACAGAGTTGTCATGGGATCAGCATCAAGCTTGGGAGAATTCAGTGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA | 1095 | 49.22 | MAAAMDFYSEGTQTDHFGGELMEAIVPFIKVASSSASSSLSTNFLSSSSSSSSPTPSLPSSFNSHLNFSQSAPQQSTLYSNGCSTSMNPGFSDGFSTQNLIGFEQPFTIGPHPLSSPQILHSQPQINLLQNQTPVAFAWGQQNHQPHQPSLCYEQQAPSFLSPKPIPMKQVASSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCIEGEFGEFRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSTAAETAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELSWDQHQAWENSVLEKYPSEIDWASILP | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41162444 | 41163538 | - | Maker00016615 | Lcy9g1599 | 642715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1599 | 364 | Gene3D | AP2/ERF domain | 180 | 238 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | CDD | AP2 | 179 | 239 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | ProSiteProfiles | AP2/ERF domain profile. | 180 | 237 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 15 | 362 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Lcy9g1599 | 364 | SMART | rav1_2 | 180 | 243 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | FunFam | Ethylene-responsive transcription factor 2 | 179 | 238 | - | - | |
Lcy9g1599 | 364 | MobiDBLite | consensus disorder prediction | 45 | 66 | - | - | |
Lcy9g1599 | 364 | PRINTS | Ethylene responsive element binding protein signature | 203 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | PRINTS | Ethylene responsive element binding protein signature | 181 | 192 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | Pfam | AP2 domain | 180 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1599 | 364 | SUPERFAMILY | DNA-binding domain | 180 | 238 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0776 | Lcy-Chr1:6603495 | Lcy9g1599 | Lcy-Chr9:41162444 | 2.35E-71 | dispersed | |
Lcy4g0635 | Lcy-Chr4:7551728 | Lcy9g1599 | Lcy-Chr9:41162444 | 1.88E-30 | dispersed | |
Lcy6g0809 | Lcy-Chr6:8094494 | Lcy9g1599 | Lcy-Chr9:41162444 | 6.68E-35 | dispersed | |
Lcy8g1527 | Lcy-Chr8:41917660 | Lcy9g1599 | Lcy-Chr9:41162444 | 1.79E-30 | dispersed | |
Lcy9g1599 | Lcy-Chr9:41162444 | Lcy6g1164 | Lcy-Chr6:13456833 | 2.21E-19 | dispersed | |
Lcy9g1599 | Lcy-Chr9:41162444 | Lcy13g1578 | Lcy-Chr13:34614837 | 1.16E-111 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20675 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1599 | K09286 | - | csv:101214560 | 588.186 |