Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1599 ATGGCAGCTGCCATGGATTTCTACAGTGAAGGAACTCAAACTGACCACTTCGGTGGAGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCCTCTCTCTCTACAAATTTCCTTTCTTCTTCTTCTTCTTCTTCTTCACCAACACCTTCTCTTCCTTCTTCCTTCAACAGCCACCTCAACTTCTCTCAGTCAGCCCCTCAACAGTCCACTTTGTACTCAAATGGATGCTCCACTTCGATGAACCCAGGATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCCGTTATCTTCACCTCAAATCCTCCATTCCCAGCCTCAGATCAATCTTCTTCAGAACCAAACCCCTGTAGCTTTTGCATGGGGGCAACAGAACCATCAACCACATCAGCCATCACTGTGCTATGAGCAACAAGCGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGCTTCGTCTTCAAAACCCACCAAGCTTTACAGAGGGGTTAGGCAACGGCATTGGGGGAAATGGGTGGCCGAGATCCGACTACCGAGGAACCGAACTCGACTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTTAATTTCCCCCACCTTAAGCACCAAGGCTCCTGCATTGAAGGCGAATTCGGCGAGTTTAGGCCTCTACATTCCTCAGTTGATGCAAAACTCCAAGCAATTTGTGATAACCTGGCCAAGCCACAGAAACAAGGCAACTCTAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCACGGCGGCAGAAACGGCAGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTGACAGAGAGTGACGGGTCTGCAGCGTCTTCACCTTTATCGGATCTTACATTCCCCGACTTCACAGAGTTGTCATGGGATCAGCATCAAGCTTGGGAGAATTCAGTGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA 1095 49.22 MAAAMDFYSEGTQTDHFGGELMEAIVPFIKVASSSASSSLSTNFLSSSSSSSSPTPSLPSSFNSHLNFSQSAPQQSTLYSNGCSTSMNPGFSDGFSTQNLIGFEQPFTIGPHPLSSPQILHSQPQINLLQNQTPVAFAWGQQNHQPHQPSLCYEQQAPSFLSPKPIPMKQVASSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCIEGEFGEFRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSTAAETAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELSWDQHQAWENSVLEKYPSEIDWASILP 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41162444 41163538 - Maker00016615 Lcy9g1599 642715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1599 364 Gene3D AP2/ERF domain 180 238 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 CDD AP2 179 239 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 362 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy9g1599 364 SMART rav1_2 180 243 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 FunFam Ethylene-responsive transcription factor 2 179 238 - -
Lcy9g1599 364 MobiDBLite consensus disorder prediction 45 66 - -
Lcy9g1599 364 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 Pfam AP2 domain 180 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1599 364 SUPERFAMILY DNA-binding domain 180 238 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0776 Lcy-Chr1:6603495 Lcy9g1599 Lcy-Chr9:41162444 2.35E-71 dispersed
Lcy4g0635 Lcy-Chr4:7551728 Lcy9g1599 Lcy-Chr9:41162444 1.88E-30 dispersed
Lcy6g0809 Lcy-Chr6:8094494 Lcy9g1599 Lcy-Chr9:41162444 6.68E-35 dispersed
Lcy8g1527 Lcy-Chr8:41917660 Lcy9g1599 Lcy-Chr9:41162444 1.79E-30 dispersed
Lcy9g1599 Lcy-Chr9:41162444 Lcy6g1164 Lcy-Chr6:13456833 2.21E-19 dispersed
Lcy9g1599 Lcy-Chr9:41162444 Lcy13g1578 Lcy-Chr13:34614837 1.16E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20675 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1599 K09286 - csv:101214560 588.186