Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1604 ATGAGAGGCACAACAAAGGACACGAGCTACATTGTGACAGATGATGATTATGATATATGCCTTGCTATTTTATCGATTTGTGATAAATTGACAGTTAAAATGAGTGACAAGAGAGAGAATTCAACTGATGAAGAACTTGAAACAAAGGAGATGGACGAGGGAAGTTCATCTTTAGATAATCAAGCACAGGATGACAGATATATTCACAAAGTTGGGGTTCCACCAAAGCAAAAACTCTACAAAGAAATCAAGTCTGCAGTGAAAGAAACATTTTTCCCTGATGATCCTCTGCGTTCATTCAAGGATCAAACAAAGAGGCGTAAATTTCTCCTCGGCATCCAGGCCGTTTTCCCAATACTTGAATGGGGAAGACATTACAATTTGACTAAGCTTAGAGGAGATGTTATTGCTGGATTTACTATTGCCAGTCTCTGCATTCCCCAGGATATTGGGTATGCAAAGCTTGCGAATTTGGCTCCAGAGTATGGATTGTACTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCGAGAGATATAGCCATTGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACGCTGCTTCAAGCGGAAATTGATTCCACTGCGAATGCAGCAGAATACAGGCGGCTGGCGTTTACAGCTACATTCTTTGCAGGGATCACACAAGCCACCCTTGGAGTTCTGAGGTTGGGATTCCTAATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGTGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATAAAGGATTTCACAAAGAAAACAGATATTATCTCCGTTATGCAGTCGGTATTCGGCACAATACGACATGGAGGGAAGAGGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTCATATCCGTTGTGCTGTCTACCCTTTTGGTTTACCTCACTCGTGCAGATAAGCAAGGGGTTGCAATTGAAGCCGTTGCGATTGGAAGAACGTTCGCTTCAATGAAAGACTATCAAATTGATGGGAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACAGGTTCATTCTCTCGATCCGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCCAACATTGTGATGTCCGTTGTAGTACTCCTAACTCTGGCATTCATGACCCCACTTTTCAAATATACTCCAAATGCAATTCTGTCTGCTATCATAATATCCGCCGTGATCAACTTGGTCGACTTGCACGCAGCGAAGTTGATATGGAAGATTGACAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCTTCGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTAATTGCGGTATCCATTTCCTTCGCCAAAATCCTACTACAGGTTACCAGACCAAGGACTGCAATTCTTGGAAAGATCCCCAGGACGACCGTCTATCGAAACATACAGCAATATCCCGAAGCAACCAAAGTTCCTGGCGTTTTGATTGTGAGAGTTGATTCAGCAATTTACTTTTCCAACTCCAATTACATCAAAGAAAGGATATTAAGATGGCTGGTTGATGAGGAAGAGTTAACGAAAAAGTCATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACGAGTGGCATACATGCTTTGGAAGAGTTGAATGGGAGTCTCAAGAAAAGAGAAATTCAGCTCATTCTAGCAAATCCGGGGCCCGTGGTGATCGACAAGCTTCATGCATCGAAGTTTGTAGATTTGATAGGCCAAGACAATATCTTCCTCACAGTTGCAGATGCAGTCTCATCTTGTAATCCAAAGATAATGAACGACGTTTGA 1902 42.85 MRGTTKDTSYIVTDDDYDICLAILSICDKLTVKMSDKRENSTDEELETKEMDEGSSSLDNQAQDDRYIHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKRRKFLLGIQAVFPILEWGRHYNLTKLRGDVIAGFTIASLCIPQDIGYAKLANLAPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQAEIDSTANAAEYRRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKDFTKKTDIISVMQSVFGTIRHGGKRNKRLFWVPAIAPLISVVLSTLLVYLTRADKQGVAIEAVAIGRTFASMKDYQIDGNKEMVAMGVMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVLLTLAFMTPLFKYTPNAILSAIIISAVINLVDLHAAKLIWKIDKFDFVACMGAFFGVIFFSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEELTKKSYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVIDKLHASKFVDLIGQDNIFLTVADAVSSCNPKIMNDV 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41227016 41232430 - Maker00016488 Lcy9g1604 642720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1604 633 ProSiteProfiles STAS domain profile. 502 625 IPR002645 -
Lcy9g1604 633 Pfam Sulfate permease family 330 451 IPR011547 GO:0016020(InterPro)
Lcy9g1604 633 Pfam Sulfate permease family 131 289 IPR011547 GO:0016020(InterPro)
Lcy9g1604 633 ProSitePatterns SLC26A transporters signature. 160 181 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lcy9g1604 633 PANTHER SULFATE TRANSPORTER 330 625 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy9g1604 633 CDD STAS_SulP_like_sulfate_transporter 503 618 - -
Lcy9g1604 633 Pfam STAS domain 503 621 IPR002645 -
Lcy9g1604 633 SUPERFAMILY SpoIIaa-like 504 626 IPR036513 -
Lcy9g1604 633 Coils Coil 538 558 - -
Lcy9g1604 633 MobiDBLite consensus disorder prediction 37 59 - -
Lcy9g1604 633 Gene3D STAS domain 482 628 IPR036513 -
Lcy9g1604 633 FunFam Sulfate transporter 31 482 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1170 Lcy-Chr10:34269769 Lcy9g1604 Lcy-Chr9:41227016 3.57E-174 dispersed
Lcy10g1812 Lcy-Chr10:42434872 Lcy9g1604 Lcy-Chr9:41227016 4.59E-93 dispersed
Lcy4g0267 Lcy-Chr4:3217940 Lcy9g1604 Lcy-Chr9:41227016 5.17E-263 dispersed
Lcy4g0268 Lcy-Chr4:3241751 Lcy9g1604 Lcy-Chr9:41227016 1.10E-274 dispersed
Lcy6g0988 Lcy-Chr6:10435839 Lcy9g1604 Lcy-Chr9:41227016 2.25E-198 dispersed
Lcy7g1317 Lcy-Chr7:18615616 Lcy9g1604 Lcy-Chr9:41227016 5.73E-198 dispersed
Lcy10g1169 Lcy-Chr10:34229942 Lcy9g1604 Lcy-Chr9:41227016 1.46E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1604 K17470 - csv:101207370 1024.23