Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1625 | ATGTCACCAACTGATCAAGAGCCTCGAATTTCCGAAGGATCACCGGACGCCAGCTCCAATTCCAATTCCAATTCCAATAACCCCAACAAGCGAGTCCGAGACTCCAGCAAGCACCCAATGTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGAGAGCCTCGCAAGAAATCCCGCATTTGGCTCGGTACCTTCCCCACGCCCGAGATGGCCGCTCGAGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCCGAACTCGCCCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCTGCTAAGGCCGCCCACATGGACCCTAATTTCCACTACTCTCCTTCCTCCTCTTCCTCCAATTCCTTGTCCACACCCATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACCGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTGATGGATTCGACCGAGGGCTGGGTTTATCCGCCGCCCTGGCTACGAACCATGGAGGATTGCGGCTACAACAGCAACGACATTATTGACGACTTGGGAATTGGGGATAGTAATTTCTTGTGGTAA | 672 | 57.14 | MSPTDQEPRISEGSPDASSNSNSNSNNPNKRVRDSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFHYSPSSSSSNSLSTPMDLSPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGYNSNDIIDDLGIGDSNFLW | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41392249 | 41392920 | + | Maker00016695 | Lcy9g1625 | 642741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1625 | 223 | CDD | AP2 | 41 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | MobiDBLite | consensus disorder prediction | 128 | 154 | - | - | |
Lcy9g1625 | 223 | SMART | rav1_2 | 40 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | PRINTS | Ethylene responsive element binding protein signature | 41 | 52 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | PRINTS | Ethylene responsive element binding protein signature | 63 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | ProSiteProfiles | AP2/ERF domain profile. | 40 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 21 | 184 | IPR051032 | - | |
Lcy9g1625 | 223 | FunFam | Ethylene-responsive transcription factor 2 | 39 | 98 | - | - | |
Lcy9g1625 | 223 | MobiDBLite | consensus disorder prediction | 125 | 155 | - | - | |
Lcy9g1625 | 223 | Gene3D | AP2/ERF domain | 40 | 98 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | SUPERFAMILY | DNA-binding domain | 40 | 98 | IPR016177 | GO:0003677(InterPro) | |
Lcy9g1625 | 223 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lcy9g1625 | 223 | Pfam | AP2 domain | 40 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1625 | 223 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0853 | Lcy-Chr2:7718615 | Lcy9g1625 | Lcy-Chr9:41392249 | 1.35E-55 | dispersed | |
Lcy4g0942 | Lcy-Chr4:15461480 | Lcy9g1625 | Lcy-Chr9:41392249 | 8.81E-40 | dispersed | |
Lcy4g2186 | Lcy-Chr4:48415335 | Lcy9g1625 | Lcy-Chr9:41392249 | 4.87E-45 | dispersed | |
Lcy6g1927 | Lcy-Chr6:40315238 | Lcy9g1625 | Lcy-Chr9:41392249 | 3.52E-31 | dispersed | |
Lcy6g2122 | Lcy-Chr6:44942944 | Lcy9g1625 | Lcy-Chr9:41392249 | 4.38E-41 | dispersed | |
Lcy9g0226 | Lcy-Chr9:5644019 | Lcy9g1625 | Lcy-Chr9:41392249 | 5.49E-30 | dispersed | |
Lcy9g0379 | Lcy-Chr9:10585394 | Lcy9g1625 | Lcy-Chr9:41392249 | 1.26E-26 | dispersed | |
Lcy9g1578 | Lcy-Chr9:40983162 | Lcy9g1625 | Lcy-Chr9:41392249 | 6.05E-24 | dispersed | |
Lcy9g1625 | Lcy-Chr9:41392249 | Lcy9g1935 | Lcy-Chr9:44365003 | 3.72E-51 | dispersed | |
Lcy3g2138 | Lcy-Chr3:48321275 | Lcy9g1625 | Lcy-Chr9:41392249 | 6.82E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20676 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1625 | K09286 | - | csv:101217333 | 284.263 |