Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1625 ATGTCACCAACTGATCAAGAGCCTCGAATTTCCGAAGGATCACCGGACGCCAGCTCCAATTCCAATTCCAATTCCAATAACCCCAACAAGCGAGTCCGAGACTCCAGCAAGCACCCAATGTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGAGAGCCTCGCAAGAAATCCCGCATTTGGCTCGGTACCTTCCCCACGCCCGAGATGGCCGCTCGAGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCCGAACTCGCCCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCTGCTAAGGCCGCCCACATGGACCCTAATTTCCACTACTCTCCTTCCTCCTCTTCCTCCAATTCCTTGTCCACACCCATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACCGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTGATGGATTCGACCGAGGGCTGGGTTTATCCGCCGCCCTGGCTACGAACCATGGAGGATTGCGGCTACAACAGCAACGACATTATTGACGACTTGGGAATTGGGGATAGTAATTTCTTGTGGTAA 672 57.14 MSPTDQEPRISEGSPDASSNSNSNSNNPNKRVRDSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFHYSPSSSSSNSLSTPMDLSPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCGYNSNDIIDDLGIGDSNFLW 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41392249 41392920 + Maker00016695 Lcy9g1625 642741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1625 223 CDD AP2 41 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 MobiDBLite consensus disorder prediction 128 154 - -
Lcy9g1625 223 SMART rav1_2 40 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 184 IPR051032 -
Lcy9g1625 223 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Lcy9g1625 223 MobiDBLite consensus disorder prediction 125 155 - -
Lcy9g1625 223 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677(InterPro)
Lcy9g1625 223 MobiDBLite consensus disorder prediction 1 30 - -
Lcy9g1625 223 Pfam AP2 domain 40 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1625 223 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0853 Lcy-Chr2:7718615 Lcy9g1625 Lcy-Chr9:41392249 1.35E-55 dispersed
Lcy4g0942 Lcy-Chr4:15461480 Lcy9g1625 Lcy-Chr9:41392249 8.81E-40 dispersed
Lcy4g2186 Lcy-Chr4:48415335 Lcy9g1625 Lcy-Chr9:41392249 4.87E-45 dispersed
Lcy6g1927 Lcy-Chr6:40315238 Lcy9g1625 Lcy-Chr9:41392249 3.52E-31 dispersed
Lcy6g2122 Lcy-Chr6:44942944 Lcy9g1625 Lcy-Chr9:41392249 4.38E-41 dispersed
Lcy9g0226 Lcy-Chr9:5644019 Lcy9g1625 Lcy-Chr9:41392249 5.49E-30 dispersed
Lcy9g0379 Lcy-Chr9:10585394 Lcy9g1625 Lcy-Chr9:41392249 1.26E-26 dispersed
Lcy9g1578 Lcy-Chr9:40983162 Lcy9g1625 Lcy-Chr9:41392249 6.05E-24 dispersed
Lcy9g1625 Lcy-Chr9:41392249 Lcy9g1935 Lcy-Chr9:44365003 3.72E-51 dispersed
Lcy3g2138 Lcy-Chr3:48321275 Lcy9g1625 Lcy-Chr9:41392249 6.82E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20676 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1625 K09286 - csv:101217333 284.263