Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1630 ATGTGTCTCTGGTTTCTGTTGGTGTCCGGTACTTTAGGATTTTTCCCTCACCCAATCTTCACAATCTCAACTTTCCCTTCCATTTCACTCTTTCCTTTTATATCTCCATTTCTCTTCTTCTCCTTGTACGTATTCCATTACTCTTCTACAGCTTTAAACCCCAACAATCCGCTTTTTCTCTATCCAATTCTTTGTTGCTCAAGCTGCCATTTCGGGGTTTTTGGAGGATTATGGCGGAAATGCGTCTTATATGACTTGGTGGAGGGTGGAAGAAGGGGGAGAACCCGAGGGCTCTCTGATTCATTGCAATTCTGCTTGGATATAAAGCGTCTTTGCTTTCTGCTGAAAGGTGTTTGTTGTTTTGTTTCTCTGGGAATTCTAGTGGGGATGATGGCTGTGACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGCAAGTATGTTAGGTACACACCTGAGCAAGTTGAAGCCCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCTAACATCGAACCTAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGGGAGAAGCAGAGGAAGGAGGCATCACGCCTGCAAACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTGTCACAGCTTGTGTACGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTAAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGACGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAAGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCGGAGATGCTCCCAAGTGGGTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATTGTTGATCACATGGACTTAGAACCTTGGAGCGTGCCAGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACGATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACGGGTTGGGGAAGAAGACCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTAAATGGTTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTTGTAAACATGTCTCATGGAAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCTATGAGCAACGCAGTGCTGTGTGCCAAGGCATCAATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGACAGTTTATGGAAGTTATAAAATTTGAAAACGTGGGCCACTATAGGGATGACATGCTCATGCCTAGTGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAGAATGCAGTTGGTACTTCTGCTGAACTCATCTTTGCTCCAATTGACGCCTCTTTCTCTGATGATGCACCTATTCTACCATCCGGCTTCCGCATCATTCCTCTTGACTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTTGGACCCGCAGGGAATAGAGCCTCTGGTGATTATGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTGTTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGAAGCATTATAGCATCTGTTCAGAGGGTGGCATTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATGCTAACCTTCAGACGCCAGCTGGTGCTCCTGAAGCCCAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTACTCAAATCCCTTTGGCATCACTCGGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2877 45.46 MCLWFLLVSGTLGFFPHPIFTISTFPSISLFPFISPFLFFSLYVFHYSSTALNPNNPLFLYPILCCSSCHFGVFGGLWRKCVLYDLVEGGRRGRTRGLSDSLQFCLDIKRLCFLLKGVCCFVSLGILVGMMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQFMEVIKFENVGHYRDDMLMPSDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDYAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWICQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41439560 41447124 + Maker00016518 Lcy9g1630 642746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1630 958 Gene3D - 329 505 IPR023393 -
Lcy9g1630 958 SUPERFAMILY Homeodomain-like 150 213 IPR009057 -
Lcy9g1630 958 CDD START_ArGLABRA2_like 289 504 - -
Lcy9g1630 958 Pfam Homeodomain 151 209 IPR001356 GO:0003677(InterPro)
Lcy9g1630 958 FunFam homeobox-leucine zipper protein ATHB-15 330 511 - -
Lcy9g1630 958 Gene3D - 143 217 - -
Lcy9g1630 958 Pfam MEKHLA domain 817 957 IPR013978 -
Lcy9g1630 958 SMART START_1 294 504 IPR002913 GO:0008289(InterPro)
Lcy9g1630 958 SMART HOX_1 148 214 IPR001356 GO:0003677(InterPro)
Lcy9g1630 958 CDD homeodomain 151 211 IPR001356 GO:0003677(InterPro)
Lcy9g1630 958 CDD bZIP 203 242 - -
Lcy9g1630 958 FunFam Homeobox-leucine zipper protein REVOLUTA 151 206 - -
Lcy9g1630 958 ProSiteProfiles 'Homeobox' domain profile. 146 210 IPR001356 GO:0003677(InterPro)
Lcy9g1630 958 Pfam START domain 295 503 IPR002913 GO:0008289(InterPro)
Lcy9g1630 958 SUPERFAMILY Bet v1-like 294 504 - -
Lcy9g1630 958 Coils Coil 220 247 - -
Lcy9g1630 958 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 143 958 IPR044830 GO:0003700(InterPro)
Lcy9g1630 958 ProSiteProfiles START domain profile. 285 499 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1904 Lcy-Chr8:45297684 Lcy9g1630 Lcy-Chr9:41439560 0 dispersed
Lcy9g1630 Lcy-Chr9:41439560 Lcy10g0519 Lcy-Chr10:13333604 3.44E-09 dispersed
Lcy3g2146 Lcy-Chr3:48383582 Lcy9g1630 Lcy-Chr9:41439560 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20678 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1630 K09338 - csv:101218438 1632.08