Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1637 ATGTCGTGGCAACAGTACGTGGATGAGCACTTGATGTGCGATATTGAAGGCAGCCGTCTCTCTGCCGCTGCGATCATTGGCCAAGACGGCACTGTTGGGCTAAGAGCTCCAGTTTTCCTCAGGTCTAATACTTCTTCTTTATTCTTCATCTTTTCTTTTGGAACTTATTTACATTTTTCAATTCAACAGTTCAAGCCAGAAGAGTTAGCAGCCATTATGAATGATTTTGCTGAACCTGGATCACTTGCTCCAACTGGTTTGTTCCACGGAGGCACCAAGTACATGGTTATTCAAGGTGAACCAGGTGCTGTCATACGAGGAAAAAAGGGTGCTGGCGGGATTACTATTAAGAAGACTAATCTGGCATTGGTCATCGGTATCTATGATGAGCCTTTGACTCCTGGTCAGTGCAACATGATTGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAG 462 45.45 MSWQQYVDEHLMCDIEGSRLSAAAIIGQDGTVGLRAPVFLRSNTSSLFFIFSFGTYLHFSIQQFKPEELAAIMNDFAEPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGAGGITIKKTNLALVIGIYDEPLTPGQCNMIVERLGDYLIEQGL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41526861 41528233 - Maker00016952 Lcy9g1637 642753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1637 153 Gene3D Dynein light chain 2a, cytoplasmic 1 153 - -
Lcy9g1637 153 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Lcy9g1637 153 SMART prof_2 1 153 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 Pfam Profilin 1 153 IPR048278 GO:0003779(InterPro)
Lcy9g1637 153 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 PRINTS Profilin signature 122 135 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 PRINTS Profilin signature 135 152 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 PANTHER PROFILIN 1 152 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Lcy9g1637 153 CDD PROF 2 152 IPR005455 GO:0003779(InterPro)
Lcy9g1637 153 SUPERFAMILY Profilin (actin-binding protein) 2 152 IPR036140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2204 Lcy-Chr4:48666256 Lcy9g1637 Lcy-Chr9:41526861 1.34E-69 dispersed
Lcy4g2205 Lcy-Chr4:48671109 Lcy9g1637 Lcy-Chr9:41526861 2.45E-63 dispersed
Lcy3g2163 Lcy-Chr3:48534447 Lcy9g1637 Lcy-Chr9:41526861 8.58E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1637 K05759 - sly:543830 205.682