Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1637 | ATGTCGTGGCAACAGTACGTGGATGAGCACTTGATGTGCGATATTGAAGGCAGCCGTCTCTCTGCCGCTGCGATCATTGGCCAAGACGGCACTGTTGGGCTAAGAGCTCCAGTTTTCCTCAGGTCTAATACTTCTTCTTTATTCTTCATCTTTTCTTTTGGAACTTATTTACATTTTTCAATTCAACAGTTCAAGCCAGAAGAGTTAGCAGCCATTATGAATGATTTTGCTGAACCTGGATCACTTGCTCCAACTGGTTTGTTCCACGGAGGCACCAAGTACATGGTTATTCAAGGTGAACCAGGTGCTGTCATACGAGGAAAAAAGGGTGCTGGCGGGATTACTATTAAGAAGACTAATCTGGCATTGGTCATCGGTATCTATGATGAGCCTTTGACTCCTGGTCAGTGCAACATGATTGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAG | 462 | 45.45 | MSWQQYVDEHLMCDIEGSRLSAAAIIGQDGTVGLRAPVFLRSNTSSLFFIFSFGTYLHFSIQQFKPEELAAIMNDFAEPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGAGGITIKKTNLALVIGIYDEPLTPGQCNMIVERLGDYLIEQGL | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41526861 | 41528233 | - | Maker00016952 | Lcy9g1637 | 642753 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1637 | 153 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 153 | - | - | |
Lcy9g1637 | 153 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | SMART | prof_2 | 1 | 153 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | Pfam | Profilin | 1 | 153 | IPR048278 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | PRINTS | Profilin signature | 122 | 135 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | PRINTS | Profilin signature | 135 | 152 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | PANTHER | PROFILIN | 1 | 152 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
Lcy9g1637 | 153 | CDD | PROF | 2 | 152 | IPR005455 | GO:0003779(InterPro) | |
Lcy9g1637 | 153 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 152 | IPR036140 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g2204 | Lcy-Chr4:48666256 | Lcy9g1637 | Lcy-Chr9:41526861 | 1.34E-69 | dispersed | |
Lcy4g2205 | Lcy-Chr4:48671109 | Lcy9g1637 | Lcy-Chr9:41526861 | 2.45E-63 | dispersed | |
Lcy3g2163 | Lcy-Chr3:48534447 | Lcy9g1637 | Lcy-Chr9:41526861 | 8.58E-66 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1637 | K05759 | - | sly:543830 | 205.682 |