Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1649 ATGCGGAAGGCGGTGCTCCGGAGTTCTCTGCCGTCCGATTGGGATGGGAATTCCTTCTGTAATTTCACCGGCGTCGCCTGCAACGAGAAGGGGTTTGTGGTCCGGATTGATCTTTCCGGTCGGGCGGTTTCCGGGAGGTTTCCGGAGGATGTGTGTTCTTATTTGCCGGAGTTGAGAGTGCTGCGCCTTGCGAAGAGTGGCTTCCGTGGAACTTTCCCACGTGGGATAACGAATTGCTCTGTTTTGGAAGAACTGGACATGGCTGCTCTGTCTCTGACTGGGACGCTACCGGATTTCTCGCCGTTGAAGAGCCTGAGGATTCTCGACTTGTCGTACAACAACTTCACCGGCGACTTCCCGTTGTCGGTCTTCGGTTTGACGAATCTCGAGACGCTGAATTTCAACGAGGATAATAATTTCAATACGTGGCAGTTACCGGAGAATATCTCCGGCTTGACGAAGCTGAAAACGATGGTGTTGACGACTTGTATGTTGGAAGGGCGAATTCCGGCGACGATTGGGAACATGACGGCGCTCGTTGACCTGGAATTGAGCGGCAATTTCCTCGCCGGAAAAATCCCGAGAGAGATCGGGAGTCTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTTGTCGACGAAATTCCGGAGGAGCTCGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCGGTCAACCACTTGACTGGAAGACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTCGAAGTCCTTCAGCTTTACAACAACTGCTTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACAACACTCACTATGTTATCTCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAGTCCTCGCCCATGGTCGTTCTCGACTTGTCGGAAAATAATTTCTCCGGTCCGTTACCGACAGATGTCTGCCAACAAGGTAAATTAATGTATTTTCTCGTTTTGGAAAATAAATTTTCCGGTGAAATCCCGCCGTCGTTAAGTAAATGTCAGTCGCTTTTACGGTTTCGAGTCAGTTCGAATTTTCTTCGAGGTCCGGTGCCGGCGGGGCTTTTGAGTCTTCCTCATGTTTCGATCATCGATTTCGGCAACAATAATTTGAGCGGCGAGATTCCGAATTCTTTTGTGAAAGCTCGGAATCTCTCGGAATTGTTCATGCAGGGCAATAAAATTTCCGGCGTGTTGCCGCCGGAGATTTCAAAAGCGACGAATTTGGTTAAGATTGATCTTAGCAACAATCTCTTGTCGGGTCCAATCCCTTCGGAAATCGGGAATCTGAAGAGGCTTAATCTGCTGCTTCTGCAAGGAAACCAGCTGAATTCTTCAATACCCACTTCGCTTTCTCAGCTGAAATCTCTCAATGTTCTTGATTTATCGGACAATCGCTTGACTGGTAACATCCCAGAAAGTCTCTGCGAATTGCTGCCGAATTCAATCAATTTCTCAGACAATCAGCTTTCTGGTCCAATTCCTCTGTCTCTGATCAAAGGTGGGTTAGTCGAAAGCTTCTCCGGCAACCCGGGACTGTGCGTTTCGGTGTACTTAGATTCTTCCGATCATAAATTCCCAATCTGTTCACAAAACTACAACAAAAAGCGACTGAATTCCATCTGGGCCATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATCTAAAACGGCGACTCAGCAGAGAAAAATCAGTAATGGAACAGGAGGAGACACTGTCGTCATCGTTCTTCTCGTACGACGTGAAAAGCTTCCACCGAATCAGCTTCGACCCACGAGAGATAATCGAGTCGATGGTGGACAAGAACATCGTCGGGCACGGCGGCTCCGGCACGGTGTACAAAATAGAATTAAGCAGCGGCGAAATCGTGGCGGTGAAAAGGCTGTGGAGTCGGAAGGGGAAGGATACGACGTCGGATCAGGATCAGTTGTATTTGGACAAAGAGCTGAAAACAGAAGTGGAGACTTTGGGGAGTATAAGGCACAAAAATATAGTGAAATTGTATTGCTATTTCTCGAGCTTGGACTGCAGCCTTTTGGTTTATGAGTATATGCCAAATGGCAATTTATGGGACGCCTTGCACAAGGGTTGGGTTCATTTGGATTGGCCGACCAGGCACCAGATTGCGCTGGGTATAGCGCAGGGCTTGGCTTATCTTCATCATGATCTGTTGCCTTCTATCATTCATAGGGACATTAAGACCACTAATATTCTGCTGGATGTGAATTATCAGCCTAAAGTTGCAGACTTTGGTATTGCCAAGGTTTTGCAAGCTAGAGCTGGGAAGGACTCCACCACCACCGTCATCGCCGGGACCTACGGTTATCTCGCCCCTGAGTATGCATATTCATCAAAAGCAACGACAAAGTGCGACGTATACAGCTTCGGGATCGTGCTAATGGAGCTGATAACGGGGAAGAAACCGGTGGAGGCGGAGTTCGGGGAGAACAAGAACATAATCTATTGGGTCTCAAACAAGGTAGACACAAAGGAAGGAGCGATGGAAGTATTGGACAAAAGAGTTTCAGGGTCATTCAAGGACGAGATGATTCAAGTTCTAAGGATTGCAATTCGGTGTACGTACAAGAATCCAGCCCTTCGACCCACCATGAAGGAAGTGGTTCAGCTGTTGATTGAAGCTGACCCTTGCAAATTCGATTCTCATAACAAATGCCCTAAAGAAACCACCACCAAAATCAAGAATAACCCATTTGAGCTATGA 2763 47.23 MRKAVLRSSLPSDWDGNSFCNFTGVACNEKGFVVRIDLSGRAVSGRFPEDVCSYLPELRVLRLAKSGFRGTFPRGITNCSVLEELDMAALSLTGTLPDFSPLKSLRILDLSYNNFTGDFPLSVFGLTNLETLNFNEDNNFNTWQLPENISGLTKLKTMVLTTCMLEGRIPATIGNMTALVDLELSGNFLAGKIPREIGSLKNLRQLELYYNSFVDEIPEELGNLTELVDLDMSVNHLTGRLPESICRLPKLEVLQLYNNCLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQSSPMVVLDLSENNFSGPLPTDVCQQGKLMYFLVLENKFSGEIPPSLSKCQSLLRFRVSSNFLRGPVPAGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQGNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLKRLNLLLLQGNQLNSSIPTSLSQLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSDNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDHKFPICSQNYNKKRLNSIWAIGISAFIIFIGAALYLKRRLSREKSVMEQEETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYQPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIQVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKETTTKIKNNPFEL 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41629593 41632864 - Maker00016751 Lcy9g1649 642765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1649 920 FunFam Receptor protein-tyrosine kinase CEPR1 248 533 - -
Lcy9g1649 920 Pfam Protein kinase domain 615 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1649 920 ProSiteProfiles Leucine-rich repeat profile. 466 488 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 227 248 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 418 440 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 394 415 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 301 318 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 250 271 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Pfam Leucine Rich Repeat 466 488 IPR001611 GO:0005515(InterPro)
Lcy9g1649 920 Gene3D Phosphorylase Kinase; domain 1 595 697 - -
Lcy9g1649 920 FunFam Leucine-rich repeat receptor-like protein kinase 142 244 - -
Lcy9g1649 920 FunFam receptor protein-tyrosine kinase CEPR1 595 697 - -
Lcy9g1649 920 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 273 892 IPR051564 GO:0016020(PANTHER)
Lcy9g1649 920 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524(InterPro)
Lcy9g1649 920 Gene3D Ribonuclease Inhibitor 140 244 IPR032675 -
Lcy9g1649 920 SMART serkin_6 612 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1649 920 FunFam leucine-rich repeat receptor-like protein kinase TDR 698 903 - -
Lcy9g1649 920 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lcy9g1649 920 SUPERFAMILY RNI-like 217 509 - -
Lcy9g1649 920 SUPERFAMILY RNI-like 35 310 - -
Lcy9g1649 920 Gene3D Transferase(Phosphotransferase) domain 1 698 912 - -
Lcy9g1649 920 SMART LRR_typ_2 464 488 IPR003591 -
Lcy9g1649 920 SMART LRR_typ_2 200 224 IPR003591 -
Lcy9g1649 920 SMART LRR_typ_2 102 126 IPR003591 -
Lcy9g1649 920 SMART LRR_typ_2 248 272 IPR003591 -
Lcy9g1649 920 Gene3D Ribonuclease Inhibitor 258 533 IPR032675 -
Lcy9g1649 920 SUPERFAMILY Protein kinase-like (PK-like) 599 891 IPR011009 -
Lcy9g1649 920 ProSiteProfiles Protein kinase domain profile. 612 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1649 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1649 920 Gene3D Ribonuclease Inhibitor 3 139 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1630 Lcy-Chr10:40710733 Lcy9g1649 Lcy-Chr9:41629593 7.64E-80 dispersed
Lcy13g1447 Lcy-Chr13:32970137 Lcy9g1649 Lcy-Chr9:41629593 2.01E-223 dispersed
Lcy9g1649 Lcy-Chr9:41629593 Lcy9g2275 Lcy-Chr9:47182689 3.07E-71 dispersed
Lcy9g1649 Lcy-Chr9:41629593 Lcy9g1650 Lcy-Chr9:41654795 1.06E-106 tandem
Lcy2g0103 Lcy-Chr2:803317 Lcy9g1649 Lcy-Chr9:41629593 2.28E-58 transposed
Lcy1g0870 Lcy-Chr1:7482960 Lcy9g1649 Lcy-Chr9:41629593 2.49E-72 wgd
Lcy6g1083 Lcy-Chr6:12087105 Lcy9g1649 Lcy-Chr9:41629593 2.85E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66210 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1649 - - - 0.0