Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1650 | ATGTCGTCTCTACATTTTCTCTACCTTCTCTCTCTTTTCACCTTGCTCACTGGAATCAAGTCTGCTGACGAGCGTCAAATTCTGACCAAACTCAAATCCAGTCTCCAAAATTCAAACACCAATGTTTTTGACGACTGGGGACTTGAAAATCCCATCTGCAACTTCACTGGAATCACCTGTAATTCAGACAATTCCGTCAGGGAAATTGACCTCTCCAGAAGGGCTTTATCTGGGGTTGTTCCTTTTGATTCCATTTGTCAGTTGAAGTCATTGGAGAAGCTGGCTTTTGGGTTCAATTCCTTGCATGGTGAAGCAACCCAGGATTTGAACAATTGTGTCAAATTGAAGTATTTGGATCTTGGTAGCAATTCCTTCTCCGGATCCTTCCCTGACATACATTCTTTGAGTGAGTTGCAGTATCTGTATTTGAATTTGAGTGGGTTTTCGGGGAAGTTTCCATGGAAATCAGTTGGGAATTTGACTGGTTTGATTCAGCTGAGCCTTGGGGATAACCCTTTTGACAACACTACGTTTCCAGTGGAGGTCACCAATTTGAAGAAACTCAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACAGAGCTTCTTAATTTGGAATTTTCAGACAATTATGTCACAGGGACTATTCCGGCGGAGATTGGGAACCTGCACAATCTATGGCAGTTGGAGTTTTACAACAATCAATTAACGGGGACACTTCCAGTGGGGTTAAGAAACCTAACCAGGCTAAAGAATTTCGACGCTTCGATAAATTATATTCATGGGGATCTATCGGAGTTGAGGTTTTTGACGAACCTGGTTACTCTGCAAATCTTTGACAACCAAATCTCCGGCCAAGTTCCGGTGGAGTTTGGTGAGTTCAAGTCGCTTGTGAATCTCTCCCTTTACAAGAACATGCTTACAGGTCCTCTTCCGCAATCGATTGGTTCTTGGACCAACTTTTATTACATCGATGCATCTGAAAATTTCTTGACGGGCTCGATTCCTCCTGATATGTGCAAGATGGGGACGATGTGGAAGCTTCTCATTCTTCAGAACAATTTCACCGGCGAAATTCCGGCGACCTACGCTAATTGCCCCACTTTAACCCGATTTAGAGTCAGTCAGAACTCGCTCAGCGGCGTCGTACCGGCCGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCGTGGAATCAATTGGAAGGTTCGATCACTTCCGATATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTTTCTGGTCGATTGCCATTGGAGATTTCGCAAGCGAAATCTCTCGCTTCGGTTGATCTGAGCAATAATCAATTCTCCGATGAAATTCCGACGACTATCGGTGACCTGAAGAATCTCGATAGCTTCGAATTACAGAGCAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTCGTGTAATTCCCTAAGTATTGTGAATCTCGCGGAGAATTTCTTCTCTGGAAAAATTCCTTCGTCTCTAGGGTTTCTTCCTGTTCTAAACTCTTTGAATCTCTCCAATAACGACCTCTCTGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTAAGTCTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAATCGCTCTCGAACGGAGCTTACAAAGAAAGCTTCGCCGGAAACCCTGGCCTCTGTAGTGAGACCGATGGCTTTCTACGGCGATGTTCACAGAGTTCCGGCGCGCCCAAAGACGTCCGAATTCTCGTCATCTGTTTCGCCGTCGGATTGCTTCTTCTCGGCGTGACGCTATGGTGCTTCATAACCTTGAAAAAGAGCGAAAAAGATCGAGATCGATCACTTAAAGAGGAATCGTGGGACCTGAAATCCTTCCACGTAATGACGTTCACAGAGGACGAGATCCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAGGGAGGTTCTGGCAACGTTTACAAAGTAACCGTCGGAAACGGGAAAGAGCTCGCCGTGAAGCATATTTGGAACACCGATCCGTACGACGGCAAGAAGAATAATCGGAGCTCATCGCCGATTCTCCGGAAACAAAGAACGAAGTCGTCGGAATTCGACTCGGAAGTGAAGACTCTGAGCTCGATCCGCCATGTGAACGTGGTGAAGCTCTACTGCAGCATTACGAGCGAGGTTTCGAACCTGTTGGTTTACGAATATATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCAGTCGGAGCGGCGAAGGGATTGGAGTATCTTCATCACGGCTGTGATCGGCCGGTGATCCACCGGGATGTTAAGTCCAGTAACATACTCTTGGATGAATTTCTCAAGCCCAGAATTGCCGATTTTGGGCTTGCCAAAATTCTTCACAGAAATGGGTTCAACGACACCACCCATGTAATTGCAGGCACCCCGGGCTACATCGCTCCAGAGTATGGATACACTTATAAAGTCGACGAGAAGAGTGATGTGTATAGTTTTGGAGTTGTGTTGATGGAGTTGGTCAGTGGGAAAAAGGCAATAGAGGCGGAGTTTGGAGAGAATAAGGATATTGTGCAATGGGTGGCAAACAATTTGAAGACTAGAGAGAGTGTGTTAAGCTTGGTAGATTCGAGAATCCCAGATGCATTTAAAGAAGATGCTATTAAGGTATTGAGAATTGCTATCTTGTGCACAGCCAAACTTCCGACGTTGAGACCCACAATGAGAAGTGTGGTTCAAATGCTTGAAGAAGCCCAACCGTGTCGGCTAGTTGGAATTGTGATAAGCAAAGATAGTGGGAGTGTTAAAAAGGAACTATCCGTAGATATCAACAAGATTAGTCTCTAA | 2940 | 44.93 | MSSLHFLYLLSLFTLLTGIKSADERQILTKLKSSLQNSNTNVFDDWGLENPICNFTGITCNSDNSVREIDLSRRALSGVVPFDSICQLKSLEKLAFGFNSLHGEATQDLNNCVKLKYLDLGSNSFSGSFPDIHSLSELQYLYLNLSGFSGKFPWKSVGNLTGLIQLSLGDNPFDNTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTELLNLEFSDNYVTGTIPAEIGNLHNLWQLEFYNNQLTGTLPVGLRNLTRLKNFDASINYIHGDLSELRFLTNLVTLQIFDNQISGQVPVEFGEFKSLVNLSLYKNMLTGPLPQSIGSWTNFYYIDASENFLTGSIPPDMCKMGTMWKLLILQNNFTGEIPATYANCPTLTRFRVSQNSLSGVVPAGIWGLPNVNIIDLAWNQLEGSITSDIGKAVALSELYIGNNRFSGRLPLEISQAKSLASVDLSNNQFSDEIPTTIGDLKNLDSFELQSNKFSGSIPETIGSCNSLSIVNLAENFFSGKIPSSLGFLPVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNQLTGPVPQSLSNGAYKESFAGNPGLCSETDGFLRRCSQSSGAPKDVRILVICFAVGLLLLGVTLWCFITLKKSEKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNTDPYDGKKNNRSSSPILRKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSNLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHRNGFNDTTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKDIVQWVANNLKTRESVLSLVDSRIPDAFKEDAIKVLRIAILCTAKLPTLRPTMRSVVQMLEEAQPCRLVGIVISKDSGSVKKELSVDINKISL | 979 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41654795 | 41658857 | - | Maker00016802 | Lcy9g1650 | 642766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1650 | 979 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 753 | 961 | - | - | |
Lcy9g1650 | 979 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 276 | 948 | IPR051716 | - | |
Lcy9g1650 | 979 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 797 | 809 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1650 | 979 | Pfam | Leucine Rich Repeat | 546 | 566 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1650 | 979 | Pfam | Leucine Rich Repeat | 523 | 544 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1650 | 979 | Pfam | Leucine Rich Repeat | 114 | 131 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1650 | 979 | Pfam | Leucine Rich Repeat | 187 | 209 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1650 | 979 | Pfam | Leucine Rich Repeat | 450 | 472 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1650 | 979 | ProSitePatterns | Protein kinases ATP-binding region signature. | 665 | 687 | IPR017441 | GO:0005524(InterPro) | |
Lcy9g1650 | 979 | SUPERFAMILY | L domain-like | 362 | 582 | - | - | |
Lcy9g1650 | 979 | FunFam | Receptor-like protein kinase HAIKU2 | 642 | 752 | - | - | |
Lcy9g1650 | 979 | Gene3D | Ribonuclease Inhibitor | 21 | 177 | IPR032675 | - | |
Lcy9g1650 | 979 | FunFam | Leucine-rich receptor-like protein kinase family protein | 180 | 276 | - | - | |
Lcy9g1650 | 979 | SUPERFAMILY | Protein kinase-like (PK-like) | 649 | 947 | IPR011009 | - | |
Lcy9g1650 | 979 | SMART | serkin_6 | 659 | 946 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1650 | 979 | SUPERFAMILY | L domain-like | 35 | 413 | - | - | |
Lcy9g1650 | 979 | FunFam | Probable inactive receptor kinase RLK902 | 21 | 179 | - | - | |
Lcy9g1650 | 979 | Pfam | Protein kinase domain | 661 | 944 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1650 | 979 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 277 | 592 | - | - | |
Lcy9g1650 | 979 | Gene3D | Transferase(Phosphotransferase) domain 1 | 753 | 955 | - | - | |
Lcy9g1650 | 979 | Gene3D | Ribonuclease Inhibitor | 305 | 593 | IPR032675 | - | |
Lcy9g1650 | 979 | Gene3D | Ribonuclease Inhibitor | 178 | 299 | IPR032675 | - | |
Lcy9g1650 | 979 | Gene3D | Phosphorylase Kinase; domain 1 | 642 | 752 | - | - | |
Lcy9g1650 | 979 | Pfam | Leucine rich repeat N-terminal domain | 22 | 61 | IPR013210 | - | |
Lcy9g1650 | 979 | ProSiteProfiles | Protein kinase domain profile. | 659 | 953 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0134 | Lcy-Chr4:1752421 | Lcy9g1650 | Lcy-Chr9:41654795 | 1.61E-200 | dispersed | |
Lcy5g1855 | Lcy-Chr5:41365553 | Lcy9g1650 | Lcy-Chr9:41654795 | 3.89E-97 | dispersed | |
Lcy6g1083 | Lcy-Chr6:12087105 | Lcy9g1650 | Lcy-Chr9:41654795 | 3.99E-80 | dispersed | |
Lcy9g1650 | Lcy-Chr9:41654795 | Lcy9g2275 | Lcy-Chr9:47182689 | 4.24E-82 | dispersed | |
Lcy9g1649 | Lcy-Chr9:41629593 | Lcy9g1650 | Lcy-Chr9:41654795 | 1.06E-106 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66211 | None | None | None | None | Lcy | PK |
Pathway information
