Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1656 ATGGAGTTGAATGAACATTATTTGTTAGATGAACTTTTAGCTTTGAGAAGAGAAATGAACTGGGAATTAGCAATGCCCACGGAAATGAACGAACTAATTTCCAGTGCAAATGGCTGGAATTTTGACTGCTCTGATTCTTCTTCTTCTGCAGCCTTCTCTTTACCGATCGATCACCAGAATTTTAGTTATCTTCTCAGTGGGCAAGGGCAGTATTCTTTGGCCGGCGACCAATTTGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGTCGTATAGTACGTTGGAGACTACGCCGAGTAGTTTTGAGGTTTACAATGGGGAGTATCCGATTACGAATATGGAAGAGGAGGAGCTCGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCCAGTTGTAAAGTCGAGCCTGAAATTCTCCCCGTTTTCAACACGCCCGCCGGCACGTGCGATTTCGGCCAGAAAATCGTCAGTTCGTCGAGTAAGAAACTCCAGGGGCAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAACGATCGCCTCTCCATGCTCCGATCCATCGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCGATTGATTACGTGAAGGAACTGCTGGAGAAAATAAACAATTTGCAAAGGGAAATTGAGGTGGGGAATAATCCGAGTAAATTGGAGTCGACGATGGGAATTTTGAGAGATGTGAAACCGAATGAGTATTTGGTCAGAAATTCACCCAAGTTTAATGTGGAAAGGAGAGAGGGGGACACTCGGATTGAGATTTGCTGTGCGGCAAAGCCAGGATTGCTGTTGTCTACAGTGCACACTCTTGAAGCGTTGGGGCTTGATATTCAGCAGTGTGTCATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCCGAGGCATGTCCAAATCTAATCTAA 963 46.63 MELNEHYLLDELLALRREMNWELAMPTEMNELISSANGWNFDCSDSSSSAAFSLPIDHQNFSYLLSGQGQYSLAGDQFAAAAASTGDSMSYSTLETTPSSFEVYNGEYPITNMEEEELGILEDEIHNLEVQASCKVEPEILPVFNTPAGTCDFGQKIVSSSSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKINNLQREIEVGNNPSKLESTMGILRDVKPNEYLVRNSPKFNVERREGDTRIEICCAAKPGLLLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEACPNLI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41746891 41748016 - Maker00017041 Lcy9g1656 642772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1656 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 232 IPR036638 GO:0046983(InterPro)
Lcy9g1656 320 Gene3D - 160 232 IPR036638 GO:0046983(InterPro)
Lcy9g1656 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 154 309 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy9g1656 320 Coils Coil 111 131 - -
Lcy9g1656 320 Coils Coil 206 226 - -
Lcy9g1656 320 Pfam Helix-loop-helix DNA-binding domain 174 216 IPR011598 GO:0046983(InterPro)
Lcy9g1656 320 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
Lcy9g1656 320 CDD ACT_UUR-ACR-like 268 309 - -
Lcy9g1656 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1454 Lcy-Chr13:33099195 Lcy9g1656 Lcy-Chr9:41746891 3.16E-95 dispersed
Lcy5g2093 Lcy-Chr5:43991297 Lcy9g1656 Lcy-Chr9:41746891 1.55E-36 dispersed
Lcy1g0855 Lcy-Chr1:7309351 Lcy9g1656 Lcy-Chr9:41746891 2.76E-76 wgd
Lcy6g1087 Lcy-Chr6:12171701 Lcy9g1656 Lcy-Chr9:41746891 6.16E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20680 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1656 - - - 0.0