Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1667 ATGTCGTCCAGGGGAGTGCGATTGCAGATACGAGATCGTCATGTGGTGGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATCATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTCAATCCTGAATCTAACAGAGGGTATTGGGATCTCGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAAAGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTTTGAGGATGTGGGATCCCTCCCTCGAGGGAAAATTTGTTCCTTTGAATATCGACAAAAGGTTCATAGTGCTACGTGGTTCCTCTGGTTTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGGATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCGGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGAAGTTGTCAAACTTTGGCCTACCCGGAAGCTGTCCTGCTTTCCAATCCTAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAAGGACTTAAAGGTCCATGGATGGATAAGCACCAATCCGCCCATCGGGTTTTGGCAGATTACACCCAGTGATGAATTTCGATCGGGTGGGCCTCATAAGCAAAGTCTAACATCCCATGTGGGACCTACAACCCTGGCTATTTTTCTTAGTGCTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAGGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACTTCAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCCGAAGTTCAAAGTTGGCCGTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTGGATCAACGGGGTACTGTTAGCGGTAGGCTTCTGGTTTTTGACAGGTATATGAGTCAAGACCATCTTCCAGCCAGTGGAGCCTTTGTCGGATTGTCTGCACCAGGAGAAGTTGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTCGAGCAGATGATCGTGGTTATTTTACCATCAACCACATACACACTGGTGACTACAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCCTCATCAACGTAAACCAAGGATCTTGCATTGAAACGGGCGATCTTGTTTATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGACAGGTTCCGGCAGTACGGGTTGTGGGACAGATATGCGGAATTATACCCGGACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGACAGAGTGGATCACAAGAGTATGTATACGCTACTAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTCCGGGTTAACGATCCGAGATCGAGGCGACCTTTGTTCACGAGCGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTCTCATCTTGTTGAAGGAGACAACACAATTTTCTTCACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACGAATCTTTACTAA 1911 44.69 MSSRGVRLQIRDRHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSSFRVIVENEEQVELSFLRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRRRLMPLPDDRLSGSCQTLAYPEAVLLSNPKNPQLKGEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSAGDDPFWLWEDAKIQMMAEVQSWPYSFPASEDFPKVDQRGTVSGRLLVFDRYMSQDHLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFTINHIHTGDYNLYAWVPGFIGDYRCDALINVNQGSCIETGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNSNSHEGTTWQIKFKLDRVDHKSMYTLLVAIASATLAELQVRVNDPRSRRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGSHLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPTNLY 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41867094 41872906 + Maker00017051 Lcy9g1667 642783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1667 636 CDD RGL4_M 331 430 IPR029413 -
Lcy9g1667 636 CDD RGL4_N 6 297 - -
Lcy9g1667 636 Gene3D - 438 629 - -
Lcy9g1667 636 SUPERFAMILY Galactose mutarotase-like 12 296 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lcy9g1667 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Lcy9g1667 636 Gene3D - 329 423 - -
Lcy9g1667 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 632 IPR051850 -
Lcy9g1667 636 CDD RGL4_C 442 629 - -
Lcy9g1667 636 Gene3D - 7 305 IPR014718 GO:0030246(InterPro)
Lcy9g1667 636 SUPERFAMILY Starch-binding domain-like 329 421 IPR013784 GO:0030246(InterPro)
Lcy9g1667 636 FunFam Rhamnogalacturonate lyase B 328 427 - -
Lcy9g1667 636 Pfam Rhamnogalacturonate lyase family 4 200 IPR010325 -
Lcy9g1667 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Lcy9g1667 636 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1667 Lcy-Chr9:41867094 Lcy9g1668 Lcy-Chr9:41877014 4.38E-294 tandem
Lcy1g0449 Lcy-Chr1:3961739 Lcy9g1667 Lcy-Chr9:41867094 2.53E-203 transposed
Lcy1g0848 Lcy-Chr1:7246762 Lcy9g1667 Lcy-Chr9:41867094 7.71E-269 wgd
Lcy13g1498 Lcy-Chr13:33627745 Lcy9g1667 Lcy-Chr9:41867094 0 wgd
Lcy6g1092 Lcy-Chr6:12258211 Lcy9g1667 Lcy-Chr9:41867094 6.60E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1667 K18195 - csv:101203947 1244.18