Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1667 | ATGTCGTCCAGGGGAGTGCGATTGCAGATACGAGATCGTCATGTGGTGGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATCATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTCAATCCTGAATCTAACAGAGGGTATTGGGATCTCGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAAAGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTTTGAGGATGTGGGATCCCTCCCTCGAGGGAAAATTTGTTCCTTTGAATATCGACAAAAGGTTCATAGTGCTACGTGGTTCCTCTGGTTTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGGATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCGGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGAAGTTGTCAAACTTTGGCCTACCCGGAAGCTGTCCTGCTTTCCAATCCTAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAAGGACTTAAAGGTCCATGGATGGATAAGCACCAATCCGCCCATCGGGTTTTGGCAGATTACACCCAGTGATGAATTTCGATCGGGTGGGCCTCATAAGCAAAGTCTAACATCCCATGTGGGACCTACAACCCTGGCTATTTTTCTTAGTGCTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAGGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACTTCAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCCGAAGTTCAAAGTTGGCCGTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTGGATCAACGGGGTACTGTTAGCGGTAGGCTTCTGGTTTTTGACAGGTATATGAGTCAAGACCATCTTCCAGCCAGTGGAGCCTTTGTCGGATTGTCTGCACCAGGAGAAGTTGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTCGAGCAGATGATCGTGGTTATTTTACCATCAACCACATACACACTGGTGACTACAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCCTCATCAACGTAAACCAAGGATCTTGCATTGAAACGGGCGATCTTGTTTATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAATCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGACAGGTTCCGGCAGTACGGGTTGTGGGACAGATATGCGGAATTATACCCGGACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGACAGAGTGGATCACAAGAGTATGTATACGCTACTAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTCCGGGTTAACGATCCGAGATCGAGGCGACCTTTGTTCACGAGCGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCAGGCTCTCATCTTGTTGAAGGAGACAACACAATTTTCTTCACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACGAATCTTTACTAA | 1911 | 44.69 | MSSRGVRLQIRDRHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSSFRVIVENEEQVELSFLRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRRRLMPLPDDRLSGSCQTLAYPEAVLLSNPKNPQLKGEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSAGDDPFWLWEDAKIQMMAEVQSWPYSFPASEDFPKVDQRGTVSGRLLVFDRYMSQDHLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFTINHIHTGDYNLYAWVPGFIGDYRCDALINVNQGSCIETGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNSNSHEGTTWQIKFKLDRVDHKSMYTLLVAIASATLAELQVRVNDPRSRRPLFTSGLIGRDNSIARHGIHGIYWLYSVGIAGSHLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPTNLY | 636 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41867094 | 41872906 | + | Maker00017051 | Lcy9g1667 | 642783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1667 | 636 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Lcy9g1667 | 636 | CDD | RGL4_N | 6 | 297 | - | - | |
Lcy9g1667 | 636 | Gene3D | - | 438 | 629 | - | - | |
Lcy9g1667 | 636 | SUPERFAMILY | Galactose mutarotase-like | 12 | 296 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Lcy9g1667 | 636 | SUPERFAMILY | Galactose-binding domain-like | 437 | 629 | IPR008979 | - | |
Lcy9g1667 | 636 | Gene3D | - | 329 | 423 | - | - | |
Lcy9g1667 | 636 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 2 | 632 | IPR051850 | - | |
Lcy9g1667 | 636 | CDD | RGL4_C | 442 | 629 | - | - | |
Lcy9g1667 | 636 | Gene3D | - | 7 | 305 | IPR014718 | GO:0030246(InterPro) | |
Lcy9g1667 | 636 | SUPERFAMILY | Starch-binding domain-like | 329 | 421 | IPR013784 | GO:0030246(InterPro) | |
Lcy9g1667 | 636 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - | |
Lcy9g1667 | 636 | Pfam | Rhamnogalacturonate lyase family | 4 | 200 | IPR010325 | - | |
Lcy9g1667 | 636 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 628 | IPR029411 | - | |
Lcy9g1667 | 636 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 425 | IPR029413 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g1667 | Lcy-Chr9:41867094 | Lcy9g1668 | Lcy-Chr9:41877014 | 4.38E-294 | tandem | |
Lcy1g0449 | Lcy-Chr1:3961739 | Lcy9g1667 | Lcy-Chr9:41867094 | 2.53E-203 | transposed | |
Lcy1g0848 | Lcy-Chr1:7246762 | Lcy9g1667 | Lcy-Chr9:41867094 | 7.71E-269 | wgd | |
Lcy13g1498 | Lcy-Chr13:33627745 | Lcy9g1667 | Lcy-Chr9:41867094 | 0 | wgd | |
Lcy6g1092 | Lcy-Chr6:12258211 | Lcy9g1667 | Lcy-Chr9:41867094 | 6.60E-284 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1667 | K18195 | - | csv:101203947 | 1244.18 |