Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1668 ATGGGCGACCGATGGCCTCGGCCTCGACGTTTCGATGCCTCCATTGCAACTTCGCATTCACGACCAACATGTAACGCTCGTCTCTCTCTATCTCTGGTTGTGATGGACAATGGGATAATTGGGGTCACGATATCGAATCCAGAGGGAATGGTCACCGGAGTAGAGTACAATGGGATTGAAAACTTGCTTGAGGTTGCCAATGGTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAATGTCGCAGGAAGTGCAGGAACCAAGGGCATTTTTGATCGAATTGAAGGAACAGATTTCAAGGTAATTGTGGAAAATGACGAACAAATCGAACTCTCGTTCAGCAGAACTTACAATTCATCCGCCGGAGGCGATCTTGTTCCCTTGAACATCGACAAAAGGTTCGTGATGCTCCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCGGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCCCCGAAAGGACAAGTTTCGGTACATGGCTGTAGCAGATAATAGACAGAGATTCATGCCTTTGCCCGAGGATCGGAAGCCACCGCGAGGAGAAGCCCTAGCTTATCCAGAGGCCGTCCTCCTGGTTGATCCTGTAGAGCCTGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATACGGCTGCGAAAGCAAAGACGCTCCGGTTCACGGGTGGATATCCGCCGATCCGCCCATTGGCCTTTGGCAAATCGCAGCCAGCGAGGAGTTTCGCTCCGGCGGGCCCCTCAAACAGATTCTCACCTCCCATGTCGGTCCCACCACCCTTACAGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTGATGAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTGTCTTTGTCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCTCTGAGACTTTGGCAAAATGCCAAAGAACAGATGATGATTGAAGCTCAAAGCTGGCCTTACAGTTTCCCTGCTTCTGAGGATTTTCTTAAATCAGATCAACGAGGCACCGTCAGCGGCAGATTGATGATCCGTGAGAGATTTGTGAGTGATGAATCCATGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAAAATGGACATTTCTCTTTGAATAATGTTCACAGTGGAAATTTTAGTCTTTATGGATGGGTCCCTAATTTTATTGGCAATTACCAATACAATGCTTTCATCACCGTAACACCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACGTTATGGGAAATAGGCATTCCTGATCGTACAGCTGCAGAATTCTATGTACCAGATCCTAATCCAAAGTTTAGACAGTATGGATTGTGGGAAAGATACACAGAATTATATCCTAAAGAGGATCTAGTTTATACAGTCGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCAGGAACTACTTGGAAAATCAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTTCGTCTTGCATTGGCAACTGCACAAGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCACCATTGTTCACAACTGGATTGATTGGAAAGGACAACACTATAGCTAGACATGGAATTCATGGTCTCTATCGGCTGTACGCTGTTGACATTCCGGGCTGTGAGCTTGTGCTCGAGGGTTTTGGCTTTGCTAAAATGGCGAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATTAAATACAACAGCATTGACAATGTTTTAGAAGTTGACGATAGGGCATCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGAACTCCAGGAACAACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATCATACAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGAACTATTCATTCAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTTCATTATATGGCCATAGCAGATAATAAACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTTCTTCTACTTCTTCACGACCTTGCTTTTTGGTCTCTTCAGCCGCTTGGTGGTTTTGATCTCTTCTCCGATTTTGACCGATTTTCTGTTTCTGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAGCAGAACCTAACCTCTCATGTGGGACCATATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCTGGAGAGGACTTGGTACTGAAGTTCAATCCTGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGGGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACAAAGGAAGTTCAGAGCTGGCCCTATTCTTTTCCTGGTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCAGCAACTGACGCATATGTGGGACTGGCAGCACCAGGAGATGCTGGATCTTGGCAAACGGAAAACAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAGAATATTCGCATTGGCGACTACAATCTTTATGCCTGGGTTCCTGGTTTTATTAGTGATTACCGTTATGATATTGTCGTTAGCGTCTCTGCAGGTAGTGATGTGGATGTAGGTGATCTTGTTTATGAGCCGCCTAGGAATGGGCCCACGTTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCCGATCCAAAGTATATTAACAAATTGTATGTCAATCATCCAGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATGCAGACTTAGTATATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTACTAGAACGAGAAATGATGGATCCCATCTGGCAACCACGTGGGAAATCAAGTTTACACTTGATAATAATATAGATAAGAGTGGCACCTATACATTGCGAGTGGCTCTCGCCACTGCCAACGTTGCTGAATTACAGGTAAACAATCCAGAAGCAAAACCTGTTCTATTTACAACAGGACAGATTGGACATGACAATACAATAGCTAGGCATGGGATTCATGGACTCTATCGACTCTACGGTGTCGACATATCGGGATCGCTACTGGTGGAAGGAGAAAACACCATCTTCCTTTCACAAGTTATAAGCAGTTCAGCTTTCAATGGCGTCATGTATGATTATATCCGCCTTGAAGGCCCCCCCATCTGA 3726 44.47 MGDRWPRPRRFDASIATSHSRPTCNARLSLSLVVMDNGIIGVTISNPEGMVTGVEYNGIENLLEVANGEDDRGYWDVVWNVAGSAGTKGIFDRIEGTDFKVIVENDEQIELSFSRTYNSSAGGDLVPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKPRKDKFRYMAVADNRQRFMPLPEDRKPPRGEALAYPEAVLLVDPVEPEFKGEVDDKYQYGCESKDAPVHGWISADPPIGLWQIAASEEFRSGGPLKQILTSHVGPTTLTVFHSAHYAGEDMVMKFGSNEPWKKVFGPVFVHLNSLPEGEDPLRLWQNAKEQMMIEAQSWPYSFPASEDFLKSDQRGTVSGRLMIRERFVSDESMPASGAYVGLALPGELGSWQTESKGYQFWTRADENGHFSLNNVHSGNFSLYGWVPNFIGNYQYNAFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKFRQYGLWERYTELYPKEDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAQAAELQVRLNDAQALPPLFTTGLIGKDNTIARHGIHGLYRLYAVDIPGCELVLEGFGFAKMANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDRASHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVIIQNEEQIELSFKRNYSFKDKEVPLNIDKRFHYMAIADNKQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVLLLLHDLAFWSLQPLGGFDLFSDFDRFSVSVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKFNPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPGSEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVPGFISDYRYDIVVSVSAGSDVDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYTVGVSDYTKDWFFAHVTRTRNDGSHLATTWEIKFTLDNNIDKSGTYTLRVALATANVAELQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYGVDISGSLLVEGENTIFLSQVISSSAFNGVMYDYIRLEGPPI 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41877014 41890607 + Maker00017039 Lcy9g1668 642784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1668 1241 CDD RGL4_N 632 910 - -
Lcy9g1668 1241 SUPERFAMILY Starch-binding domain-like 350 449 IPR013784 GO:0030246(InterPro)
Lcy9g1668 1241 Coils Coil 553 573 - -
Lcy9g1668 1241 Pfam Polysaccharide lyase family 4, domain II 375 447 IPR029413 -
Lcy9g1668 1241 Pfam Polysaccharide lyase family 4, domain II 964 1034 IPR029413 -
Lcy9g1668 1241 Pfam Polysaccharide lyase family 4, domain III 461 610 IPR029411 -
Lcy9g1668 1241 Pfam Polysaccharide lyase family 4, domain III 1049 1236 IPR029411 -
Lcy9g1668 1241 FunFam Rhamnogalacturonate lyase B 349 448 - -
Lcy9g1668 1241 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 25 610 IPR051850 -
Lcy9g1668 1241 SUPERFAMILY Galactose-binding domain-like 1046 1237 IPR008979 -
Lcy9g1668 1241 CDD RGL4_C 1051 1237 - -
Lcy9g1668 1241 FunFam Rhamnogalacturonate lyase B 937 1036 - -
Lcy9g1668 1241 Pfam Rhamnogalacturonate lyase family 616 731 IPR010325 -
Lcy9g1668 1241 Pfam Rhamnogalacturonate lyase family 23 221 IPR010325 -
Lcy9g1668 1241 Gene3D - 29 304 IPR014718 GO:0030246(InterPro)
Lcy9g1668 1241 Gene3D - 459 620 - -
Lcy9g1668 1241 Gene3D - 1047 1237 - -
Lcy9g1668 1241 CDD RGL4_N 27 312 - -
Lcy9g1668 1241 CDD RGL4_C 463 610 - -
Lcy9g1668 1241 SUPERFAMILY Starch-binding domain-like 937 1035 IPR013784 GO:0030246(InterPro)
Lcy9g1668 1241 SUPERFAMILY Galactose-binding domain-like 458 610 IPR008979 -
Lcy9g1668 1241 CDD RGL4_M 352 451 IPR029413 -
Lcy9g1668 1241 CDD RGL4_M 940 1039 IPR029413 -
Lcy9g1668 1241 Gene3D - 937 1037 - -
Lcy9g1668 1241 Gene3D - 349 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1498 Lcy-Chr13:33627745 Lcy9g1668 Lcy-Chr9:41877014 2.28E-290 dispersed
Lcy1g0449 Lcy-Chr1:3961739 Lcy9g1668 Lcy-Chr9:41877014 9.01E-177 dispersed
Lcy1g0848 Lcy-Chr1:7246762 Lcy9g1668 Lcy-Chr9:41877014 4.88E-234 dispersed
Lcy6g1092 Lcy-Chr6:12258211 Lcy9g1668 Lcy-Chr9:41877014 1.14E-243 dispersed
Lcy9g1667 Lcy-Chr9:41867094 Lcy9g1668 Lcy-Chr9:41877014 4.38E-294 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1668 K18195 - csv:101204193 1114.75