Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1668 | ATGGGCGACCGATGGCCTCGGCCTCGACGTTTCGATGCCTCCATTGCAACTTCGCATTCACGACCAACATGTAACGCTCGTCTCTCTCTATCTCTGGTTGTGATGGACAATGGGATAATTGGGGTCACGATATCGAATCCAGAGGGAATGGTCACCGGAGTAGAGTACAATGGGATTGAAAACTTGCTTGAGGTTGCCAATGGTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAATGTCGCAGGAAGTGCAGGAACCAAGGGCATTTTTGATCGAATTGAAGGAACAGATTTCAAGGTAATTGTGGAAAATGACGAACAAATCGAACTCTCGTTCAGCAGAACTTACAATTCATCCGCCGGAGGCGATCTTGTTCCCTTGAACATCGACAAAAGGTTCGTGATGCTCCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCGGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCCCCGAAAGGACAAGTTTCGGTACATGGCTGTAGCAGATAATAGACAGAGATTCATGCCTTTGCCCGAGGATCGGAAGCCACCGCGAGGAGAAGCCCTAGCTTATCCAGAGGCCGTCCTCCTGGTTGATCCTGTAGAGCCTGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATACGGCTGCGAAAGCAAAGACGCTCCGGTTCACGGGTGGATATCCGCCGATCCGCCCATTGGCCTTTGGCAAATCGCAGCCAGCGAGGAGTTTCGCTCCGGCGGGCCCCTCAAACAGATTCTCACCTCCCATGTCGGTCCCACCACCCTTACAGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTGATGAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTGTCTTTGTCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCTCTGAGACTTTGGCAAAATGCCAAAGAACAGATGATGATTGAAGCTCAAAGCTGGCCTTACAGTTTCCCTGCTTCTGAGGATTTTCTTAAATCAGATCAACGAGGCACCGTCAGCGGCAGATTGATGATCCGTGAGAGATTTGTGAGTGATGAATCCATGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAAAATGGACATTTCTCTTTGAATAATGTTCACAGTGGAAATTTTAGTCTTTATGGATGGGTCCCTAATTTTATTGGCAATTACCAATACAATGCTTTCATCACCGTAACACCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACGTTATGGGAAATAGGCATTCCTGATCGTACAGCTGCAGAATTCTATGTACCAGATCCTAATCCAAAGTTTAGACAGTATGGATTGTGGGAAAGATACACAGAATTATATCCTAAAGAGGATCTAGTTTATACAGTCGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCAGGAACTACTTGGAAAATCAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTTCGTCTTGCATTGGCAACTGCACAAGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCACCATTGTTCACAACTGGATTGATTGGAAAGGACAACACTATAGCTAGACATGGAATTCATGGTCTCTATCGGCTGTACGCTGTTGACATTCCGGGCTGTGAGCTTGTGCTCGAGGGTTTTGGCTTTGCTAAAATGGCGAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATTAAATACAACAGCATTGACAATGTTTTAGAAGTTGACGATAGGGCATCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGAACTCCAGGAACAACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATCATACAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGAACTATTCATTCAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTTCATTATATGGCCATAGCAGATAATAAACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAGTTCAAGGGAGAGGTTCTTCTACTTCTTCACGACCTTGCTTTTTGGTCTCTTCAGCCGCTTGGTGGTTTTGATCTCTTCTCCGATTTTGACCGATTTTCTGTTTCTGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAGCAGAACCTAACCTCTCATGTGGGACCATATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCTGGAGAGGACTTGGTACTGAAGTTCAATCCTGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGGGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACAAAGGAAGTTCAGAGCTGGCCCTATTCTTTTCCTGGTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCAGCAACTGACGCATATGTGGGACTGGCAGCACCAGGAGATGCTGGATCTTGGCAAACGGAAAACAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAGAATATTCGCATTGGCGACTACAATCTTTATGCCTGGGTTCCTGGTTTTATTAGTGATTACCGTTATGATATTGTCGTTAGCGTCTCTGCAGGTAGTGATGTGGATGTAGGTGATCTTGTTTATGAGCCGCCTAGGAATGGGCCCACGTTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCCGATCCAAAGTATATTAACAAATTGTATGTCAATCATCCAGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATGCAGACTTAGTATATACAGTTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTACTAGAACGAGAAATGATGGATCCCATCTGGCAACCACGTGGGAAATCAAGTTTACACTTGATAATAATATAGATAAGAGTGGCACCTATACATTGCGAGTGGCTCTCGCCACTGCCAACGTTGCTGAATTACAGGTAAACAATCCAGAAGCAAAACCTGTTCTATTTACAACAGGACAGATTGGACATGACAATACAATAGCTAGGCATGGGATTCATGGACTCTATCGACTCTACGGTGTCGACATATCGGGATCGCTACTGGTGGAAGGAGAAAACACCATCTTCCTTTCACAAGTTATAAGCAGTTCAGCTTTCAATGGCGTCATGTATGATTATATCCGCCTTGAAGGCCCCCCCATCTGA | 3726 | 44.47 | MGDRWPRPRRFDASIATSHSRPTCNARLSLSLVVMDNGIIGVTISNPEGMVTGVEYNGIENLLEVANGEDDRGYWDVVWNVAGSAGTKGIFDRIEGTDFKVIVENDEQIELSFSRTYNSSAGGDLVPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKPRKDKFRYMAVADNRQRFMPLPEDRKPPRGEALAYPEAVLLVDPVEPEFKGEVDDKYQYGCESKDAPVHGWISADPPIGLWQIAASEEFRSGGPLKQILTSHVGPTTLTVFHSAHYAGEDMVMKFGSNEPWKKVFGPVFVHLNSLPEGEDPLRLWQNAKEQMMIEAQSWPYSFPASEDFLKSDQRGTVSGRLMIRERFVSDESMPASGAYVGLALPGELGSWQTESKGYQFWTRADENGHFSLNNVHSGNFSLYGWVPNFIGNYQYNAFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKFRQYGLWERYTELYPKEDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAQAAELQVRLNDAQALPPLFTTGLIGKDNTIARHGIHGLYRLYAVDIPGCELVLEGFGFAKMANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDRASHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVIIQNEEQIELSFKRNYSFKDKEVPLNIDKRFHYMAIADNKQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVLLLLHDLAFWSLQPLGGFDLFSDFDRFSVSVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKFNPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPGSEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVPGFISDYRYDIVVSVSAGSDVDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYTVGVSDYTKDWFFAHVTRTRNDGSHLATTWEIKFTLDNNIDKSGTYTLRVALATANVAELQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYGVDISGSLLVEGENTIFLSQVISSSAFNGVMYDYIRLEGPPI | 1241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41877014 | 41890607 | + | Maker00017039 | Lcy9g1668 | 642784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1668 | 1241 | CDD | RGL4_N | 632 | 910 | - | - | |
Lcy9g1668 | 1241 | SUPERFAMILY | Starch-binding domain-like | 350 | 449 | IPR013784 | GO:0030246(InterPro) | |
Lcy9g1668 | 1241 | Coils | Coil | 553 | 573 | - | - | |
Lcy9g1668 | 1241 | Pfam | Polysaccharide lyase family 4, domain II | 375 | 447 | IPR029413 | - | |
Lcy9g1668 | 1241 | Pfam | Polysaccharide lyase family 4, domain II | 964 | 1034 | IPR029413 | - | |
Lcy9g1668 | 1241 | Pfam | Polysaccharide lyase family 4, domain III | 461 | 610 | IPR029411 | - | |
Lcy9g1668 | 1241 | Pfam | Polysaccharide lyase family 4, domain III | 1049 | 1236 | IPR029411 | - | |
Lcy9g1668 | 1241 | FunFam | Rhamnogalacturonate lyase B | 349 | 448 | - | - | |
Lcy9g1668 | 1241 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 25 | 610 | IPR051850 | - | |
Lcy9g1668 | 1241 | SUPERFAMILY | Galactose-binding domain-like | 1046 | 1237 | IPR008979 | - | |
Lcy9g1668 | 1241 | CDD | RGL4_C | 1051 | 1237 | - | - | |
Lcy9g1668 | 1241 | FunFam | Rhamnogalacturonate lyase B | 937 | 1036 | - | - | |
Lcy9g1668 | 1241 | Pfam | Rhamnogalacturonate lyase family | 616 | 731 | IPR010325 | - | |
Lcy9g1668 | 1241 | Pfam | Rhamnogalacturonate lyase family | 23 | 221 | IPR010325 | - | |
Lcy9g1668 | 1241 | Gene3D | - | 29 | 304 | IPR014718 | GO:0030246(InterPro) | |
Lcy9g1668 | 1241 | Gene3D | - | 459 | 620 | - | - | |
Lcy9g1668 | 1241 | Gene3D | - | 1047 | 1237 | - | - | |
Lcy9g1668 | 1241 | CDD | RGL4_N | 27 | 312 | - | - | |
Lcy9g1668 | 1241 | CDD | RGL4_C | 463 | 610 | - | - | |
Lcy9g1668 | 1241 | SUPERFAMILY | Starch-binding domain-like | 937 | 1035 | IPR013784 | GO:0030246(InterPro) | |
Lcy9g1668 | 1241 | SUPERFAMILY | Galactose-binding domain-like | 458 | 610 | IPR008979 | - | |
Lcy9g1668 | 1241 | CDD | RGL4_M | 352 | 451 | IPR029413 | - | |
Lcy9g1668 | 1241 | CDD | RGL4_M | 940 | 1039 | IPR029413 | - | |
Lcy9g1668 | 1241 | Gene3D | - | 937 | 1037 | - | - | |
Lcy9g1668 | 1241 | Gene3D | - | 349 | 449 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1498 | Lcy-Chr13:33627745 | Lcy9g1668 | Lcy-Chr9:41877014 | 2.28E-290 | dispersed | |
Lcy1g0449 | Lcy-Chr1:3961739 | Lcy9g1668 | Lcy-Chr9:41877014 | 9.01E-177 | dispersed | |
Lcy1g0848 | Lcy-Chr1:7246762 | Lcy9g1668 | Lcy-Chr9:41877014 | 4.88E-234 | dispersed | |
Lcy6g1092 | Lcy-Chr6:12258211 | Lcy9g1668 | Lcy-Chr9:41877014 | 1.14E-243 | dispersed | |
Lcy9g1667 | Lcy-Chr9:41867094 | Lcy9g1668 | Lcy-Chr9:41877014 | 4.38E-294 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1668 | K18195 | - | csv:101204193 | 1114.75 |