Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1679 ATGCCGCACAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACTTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGCGGCCTGCTCGCGACTTTAGTGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACTCGATCGGCAACTGCTCACGTGAAAACTTGGCTTTCCAATTGTGACGAGGACCGCGAGCTTTTGCTTCCACCACCTACCTCGGAGCCGGACCATGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCCAGGGTATCAAGCGGGAGTAGCTATGCGGGAAGTCTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGATGTTAAGGATTCTTCGGCGTCAAAGATCTTGTCCTCGCACACGGCGATGCCGGAAGAGATTGAGGTTGGAGACGGTAAGGAAAACCTGGCACAGAGAGTGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCAACGCTTCGTTCCCATGCCAGTCTCGCTGGCGATCCTGTGCTTATGGAGGAAGGCAGGGAGGAAGTTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTATCTTACTCCGACAAAATATCTGATGGGTTCTACAATATTTTGGGTATGAACCCGTATCTTTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCACCTCTTATGTCGCTTAAAACCATTGAACCAAGTGAGACGTCGATGGAGGTGATTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAAGAACTATATTGTGCTTCAGAGAACACCTTAGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCGATCTACATGGGTGGCACTTTCCCGGTGGAGCAAGGGGGGTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAATTGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTGTGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCTGATCATCGGTCCTCTTGCCTTGTCAAAATTGAAGATGATAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATATACACGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCACTCCATATTTCTCATTTAAAAGAGTTCCAAGAACCTTATGTGGAAAGTTGTTTAAGCCGACAAATTGTTGGGCCAAAGCAAACCCGTGGTTTTCCTGAACCTCTACATTCAGGTTTTGGAGAGCACCAGATGAAAGGGGGAAGCACTTTACATAAAAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCCTCTCAGCTGTGTTTGGAAACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACCGACACTGATGCCTCTGAGGTCTTGGGTTCTGTTGCCAGTGCATCTTTACATGAAAACAAAGTTGTCATTGAAGAAATATACCGAGAGTCAGTTGTGGCCGGGATTTCCCTGAATGAAACTAGCATTAATCCGTCCAATTTGAGCTTGTCAACCCAAACTGATTCAAAAGTGATTGAGGGTAGGTCTCAAAATTGTTCGGCATCAACGTATCCTAAATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCTTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGTTGAAATAGTTTTACTTCGAAATCATGAGAAATCCTACTACACTTTTTGTGGGAACTTTTCAGAGATGGGGATTGTGTTGGGTAGCAGGGATGCTAATGGAAAGCCATTTCCTGTTGCGATAATGAAGCGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACACAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCGAGGGGTAGTCTATACCGCCTAATTCACAGGCCATCTTCAGGTGAATTGATGGATCAAAGGAAAAGATTACGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTAGCAGGAACACCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGTCTTGGCCCAGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGTACTTCCCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGACGATCCGGTTCAGCGTCCATCCTTTGCAAGCATAGTCGAGTCCCTAAAGAAATTGCTAAAATCTCCACAGCAGTTGATAGCAATGGGTGGAACTTCCAAATTTACTGGGAACGTATTTTTACTGCTAACTGCACTGTTCCACTACCAGACCTGTAACCTTTATGACCGCAGAATACAGATGCTTTCTCTGAACAGCGTTGATGACTTTATTGGACTTGGAATTCAGTGCAAAGCAGTGTTTATTACAGCCAGCCATTCAAATGACAGGGCCTTACAAATGTCAAGGCTCACAGCATATGCTGATCCATGGGTTCATTATGAGTTCCTGTTCCACTACACTGATTGGTAG 3069 45.68 MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPDHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTAMPEEIEVGDGKENLAQRVKESYYLQLALAATLRSHASLAGDPVLMEEGREEVTDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLKTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESCLSRQIVGPKQTRGFPEPLHSGFGEHQMKGGSTLHKSSGAETDKLVDQACMGMRSSQLCLETKVSKECVLQSHIMPSTDTDASEVLGSVASASLHENKVVIEEIYRESVVAGISLNETSINPSNLSLSTQTDSKVIEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSVEIVLLRNHEKSYYTFCGNFSEMGIVLGSRDANGKPFPVAIMKRVRHPNVVLFMGAVTQRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGTSKFTGNVFLLLTALFHYQTCNLYDRRIQMLSLNSVDDFIGLGIQCKAVFITASHSNDRALQMSRLTAYADPWVHYEFLFHYTDW 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42015894 42025592 + Maker00016302 Lcy9g1679 642795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1679 1022 Pfam Protein tyrosine and serine/threonine kinase 653 922 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 MobiDBLite consensus disorder prediction 109 133 - -
Lcy9g1679 1022 FunFam Serine/threonine-protein kinase CTR1 747 932 - -
Lcy9g1679 1022 ProSiteProfiles Protein kinase domain profile. 653 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Lcy9g1679 1022 SMART serkin_6 653 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 Gene3D Transferase(Phosphotransferase) domain 1 747 934 - -
Lcy9g1679 1022 MobiDBLite consensus disorder prediction 20 57 - -
Lcy9g1679 1022 CDD STKc_MAP3K-like 659 922 - -
Lcy9g1679 1022 PRINTS Tyrosine kinase catalytic domain signature 893 915 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 PRINTS Tyrosine kinase catalytic domain signature 742 755 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 PRINTS Tyrosine kinase catalytic domain signature 783 801 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 PRINTS Tyrosine kinase catalytic domain signature 849 871 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 MobiDBLite consensus disorder prediction 25 40 - -
Lcy9g1679 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1679 1022 Gene3D Phosphorylase Kinase; domain 1 640 745 - -
Lcy9g1679 1022 PANTHER SERINE-THREONINE PROTEIN KINASE 299 926 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy9g1679 1022 SUPERFAMILY Protein kinase-like (PK-like) 627 921 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0371 Lcy-Chr5:3734716 Lcy9g1679 Lcy-Chr9:42015894 8.23E-163 dispersed
Lcy5g2386 Lcy-Chr5:46649161 Lcy9g1679 Lcy-Chr9:42015894 9.10E-90 dispersed
Lcy9g1679 Lcy-Chr9:42015894 Lcy9g1979 Lcy-Chr9:44705340 4.67E-94 dispersed
Lcy9g1679 Lcy-Chr9:42015894 Lcy1g1276 Lcy-Chr1:12109329 5.49E-186 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66212 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1679 - - - 0.0