Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1679 | ATGCCGCACAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACTTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGCGGCCTGCTCGCGACTTTAGTGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACTCGATCGGCAACTGCTCACGTGAAAACTTGGCTTTCCAATTGTGACGAGGACCGCGAGCTTTTGCTTCCACCACCTACCTCGGAGCCGGACCATGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCCAGGGTATCAAGCGGGAGTAGCTATGCGGGAAGTCTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGATGTTAAGGATTCTTCGGCGTCAAAGATCTTGTCCTCGCACACGGCGATGCCGGAAGAGATTGAGGTTGGAGACGGTAAGGAAAACCTGGCACAGAGAGTGAAAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCAACGCTTCGTTCCCATGCCAGTCTCGCTGGCGATCCTGTGCTTATGGAGGAAGGCAGGGAGGAAGTTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTATCTTACTCCGACAAAATATCTGATGGGTTCTACAATATTTTGGGTATGAACCCGTATCTTTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCACCTCTTATGTCGCTTAAAACCATTGAACCAAGTGAGACGTCGATGGAGGTGATTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAAGAACTATATTGTGCTTCAGAGAACACCTTAGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCGATCTACATGGGTGGCACTTTCCCGGTGGAGCAAGGGGGGTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAATTGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTGTGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCTGATCATCGGTCCTCTTGCCTTGTCAAAATTGAAGATGATAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATATACACGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCACTCCATATTTCTCATTTAAAAGAGTTCCAAGAACCTTATGTGGAAAGTTGTTTAAGCCGACAAATTGTTGGGCCAAAGCAAACCCGTGGTTTTCCTGAACCTCTACATTCAGGTTTTGGAGAGCACCAGATGAAAGGGGGAAGCACTTTACATAAAAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCCTCTCAGCTGTGTTTGGAAACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACCGACACTGATGCCTCTGAGGTCTTGGGTTCTGTTGCCAGTGCATCTTTACATGAAAACAAAGTTGTCATTGAAGAAATATACCGAGAGTCAGTTGTGGCCGGGATTTCCCTGAATGAAACTAGCATTAATCCGTCCAATTTGAGCTTGTCAACCCAAACTGATTCAAAAGTGATTGAGGGTAGGTCTCAAAATTGTTCGGCATCAACGTATCCTAAATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCTTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGTTGAAATAGTTTTACTTCGAAATCATGAGAAATCCTACTACACTTTTTGTGGGAACTTTTCAGAGATGGGGATTGTGTTGGGTAGCAGGGATGCTAATGGAAAGCCATTTCCTGTTGCGATAATGAAGCGGGTCCGCCATCCGAATGTGGTACTCTTCATGGGTGCAGTTACACAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCGAGGGGTAGTCTATACCGCCTAATTCACAGGCCATCTTCAGGTGAATTGATGGATCAAAGGAAAAGATTACGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTAGCAGGAACACCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGTCTTGGCCCAGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGTACTTCCCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGACGATCCGGTTCAGCGTCCATCCTTTGCAAGCATAGTCGAGTCCCTAAAGAAATTGCTAAAATCTCCACAGCAGTTGATAGCAATGGGTGGAACTTCCAAATTTACTGGGAACGTATTTTTACTGCTAACTGCACTGTTCCACTACCAGACCTGTAACCTTTATGACCGCAGAATACAGATGCTTTCTCTGAACAGCGTTGATGACTTTATTGGACTTGGAATTCAGTGCAAAGCAGTGTTTATTACAGCCAGCCATTCAAATGACAGGGCCTTACAAATGTCAAGGCTCACAGCATATGCTGATCCATGGGTTCATTATGAGTTCCTGTTCCACTACACTGATTGGTAG | 3069 | 45.68 | MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPDHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTAMPEEIEVGDGKENLAQRVKESYYLQLALAATLRSHASLAGDPVLMEEGREEVTDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLKTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESCLSRQIVGPKQTRGFPEPLHSGFGEHQMKGGSTLHKSSGAETDKLVDQACMGMRSSQLCLETKVSKECVLQSHIMPSTDTDASEVLGSVASASLHENKVVIEEIYRESVVAGISLNETSINPSNLSLSTQTDSKVIEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSVEIVLLRNHEKSYYTFCGNFSEMGIVLGSRDANGKPFPVAIMKRVRHPNVVLFMGAVTQRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGTSKFTGNVFLLLTALFHYQTCNLYDRRIQMLSLNSVDDFIGLGIQCKAVFITASHSNDRALQMSRLTAYADPWVHYEFLFHYTDW | 1022 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42015894 | 42025592 | + | Maker00016302 | Lcy9g1679 | 642795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1679 | 1022 | Pfam | Protein tyrosine and serine/threonine kinase | 653 | 922 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Lcy9g1679 | 1022 | FunFam | Serine/threonine-protein kinase CTR1 | 747 | 932 | - | - | |
Lcy9g1679 | 1022 | ProSiteProfiles | Protein kinase domain profile. | 653 | 926 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 241 | 449 | - | - | |
Lcy9g1679 | 1022 | SMART | serkin_6 | 653 | 926 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | Gene3D | Transferase(Phosphotransferase) domain 1 | 747 | 934 | - | - | |
Lcy9g1679 | 1022 | MobiDBLite | consensus disorder prediction | 20 | 57 | - | - | |
Lcy9g1679 | 1022 | CDD | STKc_MAP3K-like | 659 | 922 | - | - | |
Lcy9g1679 | 1022 | PRINTS | Tyrosine kinase catalytic domain signature | 893 | 915 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | PRINTS | Tyrosine kinase catalytic domain signature | 742 | 755 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | PRINTS | Tyrosine kinase catalytic domain signature | 783 | 801 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | PRINTS | Tyrosine kinase catalytic domain signature | 849 | 871 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | MobiDBLite | consensus disorder prediction | 25 | 40 | - | - | |
Lcy9g1679 | 1022 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 789 | 801 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1679 | 1022 | Gene3D | Phosphorylase Kinase; domain 1 | 640 | 745 | - | - | |
Lcy9g1679 | 1022 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 299 | 926 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lcy9g1679 | 1022 | SUPERFAMILY | Protein kinase-like (PK-like) | 627 | 921 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0371 | Lcy-Chr5:3734716 | Lcy9g1679 | Lcy-Chr9:42015894 | 8.23E-163 | dispersed | |
Lcy5g2386 | Lcy-Chr5:46649161 | Lcy9g1679 | Lcy-Chr9:42015894 | 9.10E-90 | dispersed | |
Lcy9g1679 | Lcy-Chr9:42015894 | Lcy9g1979 | Lcy-Chr9:44705340 | 4.67E-94 | dispersed | |
Lcy9g1679 | Lcy-Chr9:42015894 | Lcy1g1276 | Lcy-Chr1:12109329 | 5.49E-186 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66212 | None | None | None | None | Lcy | PK |
Pathway information
