Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1687 | ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAATCTTTTCCCCGCTCCTTTTCCATCGCCGCCACTCCGCCGCCGCGCGATTCAACCGCCGCTGCCGATGACGATTCCACCGCCGGCCCCTCGCCTCTCACTCACGCTATGCTCCCCAAAGAACCGGCCTCCGGAGGCGACGGAGCTTCCATCGAGGTCGTCCGCCGCCCCCGCGGCCGCCCGCCGGGATCGAAGAACAAGCCGAAGCCAACCGCCGTCGTCGTCGCCGCACGGGACTCCGAGCCGGCGATGAGTCCTTATGTGCTCGAAGTTCCCGGCGGTAGCGATGTCGTTGAGGCTATTTCCCGATTTTGCCGCCGCAGAAACACAGGACTATGTATTCTCAACGCTTACGGAACCGTCGCTGATGTCACTCTCCGGCAGCCGTCTTCATCTCCGGTGGGGACCGTCACTTTCCATGGACGATTCGATATTCTCTCGGTCTGCGCCACTTTTGTTCCTCATACGACGTCGTTTCCCGTTCCTAACGGATTCACCATCACGCTAGCGGGGCCGCAGGGCCAGATCTTCGGCGGCTTGGTCGCCGGAGCTTTAATCGGCGCCGGAACCGTCTACGTAATAGCCGCCTCATTCAACAATCCGTCGTATCAGCGGCTGCCTTCGGAAGACGAAGTCAGAAAATTAGCCTTCAGCGACGTCGAAGAAGGTCACTCTCCGCCGATCTCCGGCGGCAAAGACAGCGAAAACACCGCCGCCGCCGCCGATACCTGCGGCCTGCTGCCTATGTACAGCACTCACTCGTCCTCCGATGTAATTTGGACTCCCGCCGCTAGACAACCGCCGCCGCCGCACCACCGCCAGTACTAA | 867 | 61.36 | MFPKPHHQPPPHSQSFPRSFSIAATPPPRDSTAAADDDSTAGPSPLTHAMLPKEPASGGDGASIEVVRRPRGRPPGSKNKPKPTAVVVAARDSEPAMSPYVLEVPGGSDVVEAISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVGTVTFHGRFDILSVCATFVPHTTSFPVPNGFTITLAGPQGQIFGGLVAGALIGAGTVYVIAASFNNPSYQRLPSEDEVRKLAFSDVEEGHSPPISGGKDSENTAAAADTCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY | 288 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 42096058 | 42096924 | + | Maker00016879 | Lcy9g1687 | 642803 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1687 | 288 | CDD | DUF296 | 99 | 211 | IPR005175 | - | |
| Lcy9g1687 | 288 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Lcy9g1687 | 288 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 96 | 223 | - | - | |
| Lcy9g1687 | 288 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 212 | IPR005175 | - | |
| Lcy9g1687 | 288 | FunFam | AT-hook motif nuclear-localized protein | 98 | 229 | - | - | |
| Lcy9g1687 | 288 | Gene3D | - | 98 | 235 | - | - | |
| Lcy9g1687 | 288 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 52 | 246 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Lcy9g1687 | 288 | ProSiteProfiles | PPC domain profile profile. | 94 | 234 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1687 | Lcy-Chr9:42096058 | Lcy9g2360 | Lcy-Chr9:47863649 | 2.28E-44 | dispersed | |
| Lcy13g1472 | Lcy-Chr13:33305642 | Lcy9g1687 | Lcy-Chr9:42096058 | 3.06E-94 | wgd |
Pathway information