Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1690 ATGATTTCTCCTTGCCAGTCCCCAGATCGATGGTGTGTGATTTGCTCCAAAAGTTTTCAGTTTCTGCGTCCTAATGACGACACATCGAAAGCTCTAGAAACCACAGCACCACCGATCAGCGCAACATTTCGACGACGGGCAGAGGGAGCAATGCGCTTCGGTACGATCCCTTTTCCCCTTGAAGTTGAGGATTCATGGCTAATTTTGCTTCTTCTCTCCTTTGCATGGATCAAATTTGCTCCGATCAGATCGCTGGCTGTTGGTTATCACACAACAATCAAGGTTTCTGTATGGTACTCAGAGCTCACGGTTCAGCATAAAGCGCCTGTAATTCATGAAGGGAAGGTTCCATTCCATCCAGAAAAGCAAAGAAAACTTGCATTTACTAAGTATTGTCTCTTAGCACAGCATTTAAGGAAGCATAGATTACTCAATCTAGCGAAAGTGGGTATAGAATATGCATTTGTGAATGTTTATGCTACAATTAATCGAGAAAGTAGCTGCCTAGCTGTTCCAATGGCTTGCAAGTTCCTGTTTCCTCCGTTAGTAGCTTCACTTCTAATACTTTTAACCCTTCTTAGCTCATCATCTGCAGCAGATGATTCTCTCACTAATTTTTCCCCTGCAAAAGCCATCTGCAAATTCACTTCAAATCCTTCTTACTGCATCTCTGTGCTTCAAAAATCCACAGGCAATGTCTACGAGTCAGGTCGGTTTTCGATGCGTCGGTCTTTGTCCAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACAGTTCAACTCTACCAAAATCCGTCACTGGAGCTCTTACAGATTGCCGGTATCTTGCCCAACTAAACATCAATTTCTTGTCTAATTCATTTCGGGCCGTCAATGGCACTGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAGAGTCTTCTGAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAAAACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTCTTAGCTCCACTCATTGACTGTACCAAATCCTACAGTCTTTCTCTGGATCTTTTTACAAAGGGCTGGGTGCCTAGGAATAGAAACAGAACACTTGAGCACCCTGGGAGAAAACACCTCCAGTTTAGGAAGGGACCGTTACCGTTGAGAATGTCGAGACACGACTGTGCGGTTTATAACTCGGTGGCGAATCGGAGAAGGCTTTCATCTTCATCAGATGATGGAGTTTTGATTAATGGCATTGTAGTTGTGAGTCAAGATGGCACAGGGGACTTCCTCACCATCACTGACGCTGTTAATGCATCTCCAAACAACTCTCTTGCTGCCAATGGCTACTTCTTGATTTACATCACGGCTGGTGTTTACCAAGAGTATGTGTCGATCCCTTCCAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATTACGGGCAACCGAAGCGTCGTGGACGGGTGGACAACTTTCAATAGTGCAACTTTTGCTGTGGCAGCAGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACACAGCCGGAGCAATCAAAGGCCAAGCAGTTGCAGTACGAAGCGGCGCCGATATGTCTGTCTTCTACAGCTGCAGCTTTGAAGGCTACCAAGACACCTTATACACACACTCCCTCAGACAATTCTTCAGAGAATGTGACATCTATGGCACAGTGGACTTCATATTTGGAAATGCTGCTGTGGTGTTCCAAAACTGCAACATATATCCCCGTCTACCGCGTCCAGGACAGAGCAACATGATCACAGCTCAAGGTCGATCGGACCCGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGAGCCACGAGCGACTTGGCTGCGAGCAACAGCTACATCAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTGTATATGCAGACATTCATTGATGGGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGTGAATATCTAAGCACTTTATATTATGCTGAGTATAACAATACAGGAGCTGGATCAAATACAAAGAACAGAGTTACCTGGCCTGGTTACCATGTGATTTATAATGCTACAGATGCTTCTAATTTTACAGTTTCAAACTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACTGATGTGCCTTACACTGGAGGCTTTGTATAA 2208 44.16 MISPCQSPDRWCVICSKSFQFLRPNDDTSKALETTAPPISATFRRRAEGAMRFGTIPFPLEVEDSWLILLLLSFAWIKFAPIRSLAVGYHTTIKVSVWYSELTVQHKAPVIHEGKVPFHPEKQRKLAFTKYCLLAQHLRKHRLLNLAKVGIEYAFVNVYATINRESSCLAVPMACKFLFPPLVASLLILLTLLSSSSAADDSLTNFSPAKAICKFTSNPSYCISVLQKSTGNVYESGRFSMRRSLSKASRFFDLIEKHLQNSSTLPKSVTGALTDCRYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLKTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRNRTLEHPGRKHLQFRKGPLPLRMSRHDCAVYNSVANRRRLSSSSDDGVLINGIVVVSQDGTGDFLTITDAVNASPNNSLAANGYFLIYITAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVVDGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVAVRSGADMSVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQSNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASNSYINKTYLGRPWKQYSRTVYMQTFIDGFINPGGWDPWSGEYLSTLYYAEYNNTGAGSNTKNRVTWPGYHVIYNATDASNFTVSNFLVGDVWLPPTDVPYTGGFV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42119248 42124490 + Maker00016333 Lcy9g1690 642806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1690 735 CDD PMEI-like_3 211 362 - -
Lcy9g1690 735 Pfam Pectinesterase 421 720 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy9g1690 735 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 210 360 IPR035513 -
Lcy9g1690 735 PANTHER PECTINESTERASE 187 725 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lcy9g1690 735 FunFam Pectinesterase 416 734 - -
Lcy9g1690 735 SMART PMEI_2 204 357 IPR006501 GO:0004857(InterPro)
Lcy9g1690 735 ProSitePatterns Pectinesterase signature 2. 567 576 IPR033131 -
Lcy9g1690 735 Gene3D - 417 734 IPR012334 -
Lcy9g1690 735 SUPERFAMILY Pectin lyase-like 417 732 IPR011050 -
Lcy9g1690 735 Pfam Plant invertase/pectin methylesterase inhibitor 210 356 IPR006501 GO:0004857(InterPro)
Lcy9g1690 735 NCBIfam pectinesterase inhibitor domain 186 331 IPR006501 GO:0004857(InterPro)
Lcy9g1690 735 Gene3D Invertase/pectin methylesterase inhibitor family protein 208 360 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1772 Lcy-Chr3:45000358 Lcy9g1690 Lcy-Chr9:42119248 1.06E-222 dispersed
Lcy7g0539 Lcy-Chr7:4780217 Lcy9g1690 Lcy-Chr9:42119248 2.69E-161 dispersed
Lcy7g2042 Lcy-Chr7:48067961 Lcy9g1690 Lcy-Chr9:42119248 2.18E-94 dispersed
Lcy8g0182 Lcy-Chr8:4307615 Lcy9g1690 Lcy-Chr9:42119248 2.67E-84 dispersed
Lcy9g1120 Lcy-Chr9:35112843 Lcy9g1690 Lcy-Chr9:42119248 6.75E-49 dispersed
Lcy9g1690 Lcy-Chr9:42119248 Lcy13g1039 Lcy-Chr13:22711472 5.22E-43 dispersed
Lcy9g1690 Lcy-Chr9:42119248 Lcy8g0358 Lcy-Chr8:10990330 1.11E-189 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1690 K01051 - csv:101205879 999.579