Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1731 ATGGCGAAAGAGAGAGAACTACTCGTTTACTCTGCTAGATTGGCAGAGCAGGCTGAGAGATATGAAGAGATGGTTGAGGAAATGAAGAAAGTTGCGATTTTAAATGTGGAATTGACAGTTGAAGAGAGAAATCTGCTGTCTGTTGGCTATAAGAATGTAATAGGAGCTAGGCGAGCTTCATGGCGGATTTTGTCTTCAATTGAACAAAAGGAGACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGGGTACAGGCAACGGGTTGAAGAGGAGCTCTCTAAAATATGCAGTGACATATTGTCAACTATTGACCAGCATCTCCTTCCAAGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGATTATTGTCGGTATTTGGCCGAGTTTAAATCTGGCGATGAGCGCAAACAAGTAGCAGATCAGTCATTAAAGGCTTATGAGGCTGCTTCTGCTATTGCTAACTCTGATTTGCCTCCAACTCATCCTATAAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTCTACTATGAGATTTTGAATTCCCCTGAAAGGGCTTGCCACCTTGCCAAGAACGCCTTTGACGAGGCAATTGCAGAACTTGACAGTCTAAATGAAGATTCTTACAAGGACAGCACCCTCATTATGCAGCTTCTCAGGGACAATCTGACCCTGTGGACCTCTGATCTGCCAGACGAAGGAGAGCAGTCCAATGCTGATGAAATTTAA 747 42.97 MAKERELLVYSARLAEQAERYEEMVEEMKKVAILNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRQRVEEELSKICSDILSTIDQHLLPSSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKAYEAASAIANSDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKNAFDEAIAELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPDEGEQSNADEI 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42510263 42514549 + Maker00016531 Lcy9g1731 642847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1731 248 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
Lcy9g1731 248 Gene3D - 1 247 IPR036815 -
Lcy9g1731 248 SMART 1433_4 5 246 IPR023410 -
Lcy9g1731 248 Coils Coil 11 31 - -
Lcy9g1731 248 FunFam 14-3-3 protein epsilon 1 246 - -
Lcy9g1731 248 Pfam 14-3-3 protein 12 233 IPR023410 -
Lcy9g1731 248 Coils Coil 193 213 - -
Lcy9g1731 248 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
Lcy9g1731 248 PANTHER 14-3-3 PROTEIN 4 238 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lcy9g1731 248 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Lcy9g1731 248 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Lcy9g1731 248 PIRSF 14-3-3 1 247 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1545 Lcy-Chr13:34264363 Lcy9g1731 Lcy-Chr9:42510263 2.93E-112 dispersed
Lcy4g0704 Lcy-Chr4:8511065 Lcy9g1731 Lcy-Chr9:42510263 8.41E-120 dispersed
Lcy7g0331 Lcy-Chr7:2797651 Lcy9g1731 Lcy-Chr9:42510263 2.65E-99 dispersed
Lcy9g1719 Lcy-Chr9:42390305 Lcy9g1731 Lcy-Chr9:42510263 3.91E-114 dispersed
Lcy13g1561 Lcy-Chr13:34461817 Lcy9g1731 Lcy-Chr9:42510263 1.62E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1731 K06630 - csv:101213169 453.751