Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1733 | ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCGGATTAGATCTGCGTCAAACTACGGTAAAGGAAGAAGCCATGAGGGGTTAATCAAGTATGGATTCTGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTACAGATTCAAGAACATGAGTTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATCTGTTTTCTAATATCCTGAAAGAGGAAGAGTTTTGGGTTGACCCGAACAGCTCCATCTCAAAAGCCTATGAGAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGACGACTATGGGTGGCCAATGTTGGAGACTCCCGTGCAGTTCTCTCAAGAGGGGGTGAAGCTGTACAGATGACCATCGATCACGAGCCGAATACAGAACGTGGCATCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGTAACTTATATCTTATCTAG | 567 | 44.09 | MDKLCCFNASYSRIRSASNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERGIIENKGGFVSNMPGNLYLI | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42519459 | 42522976 | - | Maker00016993 | Lcy9g1733 | 642849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1733 | 188 | CDD | PP2Cc | 30 | 185 | IPR001932 | - | |
Lcy9g1733 | 188 | Gene3D | - | 13 | 187 | IPR036457 | - | |
Lcy9g1733 | 188 | SUPERFAMILY | PP2C-like | 26 | 180 | IPR036457 | - | |
Lcy9g1733 | 188 | PANTHER | PROTEIN PHOSPHATASE | 26 | 180 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lcy9g1733 | 188 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 188 | IPR001932 | - | |
Lcy9g1733 | 188 | Pfam | Protein phosphatase 2C | 40 | 180 | IPR001932 | - | |
Lcy9g1733 | 188 | SMART | PP2C_4 | 23 | 187 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0368 | Lcy-Chr6:3404120 | Lcy9g1733 | Lcy-Chr9:42519459 | 1.90E-70 | dispersed | |
Lcy9g1311 | Lcy-Chr9:37855499 | Lcy9g1733 | Lcy-Chr9:42519459 | 2.18E-59 | dispersed | |
Lcy9g1733 | Lcy-Chr9:42519459 | Lcy9g1917 | Lcy-Chr9:44161374 | 6.80E-32 | dispersed | |
Lcy9g1733 | Lcy-Chr9:42519459 | Lcy4g0673 | Lcy-Chr4:8138087 | 7.51E-63 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1733 | K17506 | - | csv:101213414 | 359.377 |