Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1733 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCGGATTAGATCTGCGTCAAACTACGGTAAAGGAAGAAGCCATGAGGGGTTAATCAAGTATGGATTCTGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTACAGATTCAAGAACATGAGTTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATCTGTTTTCTAATATCCTGAAAGAGGAAGAGTTTTGGGTTGACCCGAACAGCTCCATCTCAAAAGCCTATGAGAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGACGACTATGGGTGGCCAATGTTGGAGACTCCCGTGCAGTTCTCTCAAGAGGGGGTGAAGCTGTACAGATGACCATCGATCACGAGCCGAATACAGAACGTGGCATCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGTAACTTATATCTTATCTAG 567 44.09 MDKLCCFNASYSRIRSASNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERGIIENKGGFVSNMPGNLYLI 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42519459 42522976 - Maker00016993 Lcy9g1733 642849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1733 188 CDD PP2Cc 30 185 IPR001932 -
Lcy9g1733 188 Gene3D - 13 187 IPR036457 -
Lcy9g1733 188 SUPERFAMILY PP2C-like 26 180 IPR036457 -
Lcy9g1733 188 PANTHER PROTEIN PHOSPHATASE 26 180 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy9g1733 188 ProSiteProfiles PPM-type phosphatase domain profile. 31 188 IPR001932 -
Lcy9g1733 188 Pfam Protein phosphatase 2C 40 180 IPR001932 -
Lcy9g1733 188 SMART PP2C_4 23 187 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0368 Lcy-Chr6:3404120 Lcy9g1733 Lcy-Chr9:42519459 1.90E-70 dispersed
Lcy9g1311 Lcy-Chr9:37855499 Lcy9g1733 Lcy-Chr9:42519459 2.18E-59 dispersed
Lcy9g1733 Lcy-Chr9:42519459 Lcy9g1917 Lcy-Chr9:44161374 6.80E-32 dispersed
Lcy9g1733 Lcy-Chr9:42519459 Lcy4g0673 Lcy-Chr4:8138087 7.51E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1733 K17506 - csv:101213414 359.377