Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1752 ATGGATTCAAAGAAGTCCAACAAAATCCGAGACATCGTGAGGCTTCAACAGATCCTGAAGAAGTGGCGAAAGCTAGCGAACTCATCCAAGACGGCGAACAAGCTCTCCGGCACGGCGGCGGGACCGGCCGGAAAGAGCATAAAGTTTATGAAGCGGACTCTGTCGGCCGGGCGGGAGAGCTCCGGCGGCGGCGGCGTGCCGAAAGGCTATTTGGCGGTGAGCGTCGGCGAGGAGCAGAAGCGATTCGTGATTCCGACGCAGTACCTAGGGCATCCGGCGTTTGAGATTCTGCTGAGAGAGGCGGAGGAGGAGTTTGGATTTCAACAGACGGGAGTGTTGAGGCTGCCGTGTGAAGTGACGGTGTTTGAAAATGTGGTGAAATTGGTGGAGAAGAAGGGGGATTTGGATTTGCTTGGAGGAGATGAGGTTTTAAGCGTTTGGAGGCGATCCAGGGCTGAATCGAGGAGGGCAGAATTGAGGCACCTCGGACCAGAGACGGAAGCACGGGCCGAGCAGGGGTCAGGTCAAGGCTCGGGTCTCTTCGACCTTGGGCCGACCTTTTGGCCCGTTTCGTCTTCGGAGTCCATTTTTCGGTCCTATTTCTGGACTCGTGTCAGGATTGTTCTTGTCAGCTCCTTGTACAACAGAGTGGTTTATGTGAATGGCAAGGCCAAGCAAAAAGGATCAGCTATTCTATCTTCTCATGTGAATTTGTATGAGAGTGGAGAAGATATGACCTGTAAGACAAACAAACACTACACACCGGTGTGTTGTAGACCACACGCACTCCGATGCTTAAGTCAGTACCGGACTAGGAGACAACTGAACGTTAAGGAGCTCTTAGAGTGTGAAGCAAAAGCAAGTGAAGAGATGAGCTTCAAGTCACTAACGATTTTCGTTCTCCTTCTCTCTTTCTCCGCCGCCCCAACCGCCACCGTGTGCGACGCCGAATCGCTGCCGGACCGAAGCAATTTCCGATACGATCAAATCACAGTCCTCATCAACGGCTATTACGAGTCCCGCATCCCTCTCCTCCAATCAATAGCCGCCACGTATGCCGCATCGCCATTCGTACACAAAGTACTCATCCTTTGGGGAAATCCCTCAACCTCAACAAAAACCCTCAAAAAATTGGCTCAAAACCTCACAGCTGGACCGATCGCTCTAATCCGCCAATCTTCAAACAGCCTCAATTCTCGCTTCCTTCCCCGAAAATCCATCCAAACCGGCGCCGTTTTGATCTGCGACGACGACGTCGAGATCGACACGTCGTCCCTCGAATTCGCGTTCAGAATTTGGGGGAGAAACCGCGAACGACTCGTCGGCTTCTTCGTTCGATCTCACGATCTAGACCTCTCGAGGCGGGAATGGATCTACACCGTCCATCAAGACAAGTACTCGATCGTGCTGACGAAGCTGATGATTCTCAAGACGGAGTATTTGTTCGAGTATAATTGCGGAGGCGGAGCGGCGATGGCCGACATGAGGAGAGTTGTCGATCGGGAGCGGAACTGCGAGGATATTTTGATGAATTTTGTGGTGGCCGACATGTCGAACGCTGGGCCTATTCTGGTTGCGGCGCAGAGGATCAGGGACTGGGGGGACCCACGGAATGAAGATGATGGGAATGGACGGCTGGGATTGAGTGAGGTGGGGCTGAGTAATAGGAAAGGGGAGCATAGGAAGAGAAGGGGACGGTGTATAACGGAGTTTCATAAACGGTTCGGGAGGATGCCGTTACGGTATAGTTACGGGAAGTTAGTTAATTCAGTTGGGGAGCAGGGTTTGTGTAGGAAAGGAGGGAAGTTGGTCCTTTGTGATCAAAATGTACTATGA 1836 52.34 MDSKKSNKIRDIVRLQQILKKWRKLANSSKTANKLSGTAAGPAGKSIKFMKRTLSAGRESSGGGGVPKGYLAVSVGEEQKRFVIPTQYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVTVFENVVKLVEKKGDLDLLGGDEVLSVWRRSRAESRRAELRHLGPETEARAEQGSGQGSGLFDLGPTFWPVSSSESIFRSYFWTRVRIVLVSSLYNRVVYVNGKAKQKGSAILSSHVNLYESGEDMTCKTNKHYTPVCCRPHALRCLSQYRTRRQLNVKELLECEAKASEEMSFKSLTIFVLLLSFSAAPTATVCDAESLPDRSNFRYDQITVLINGYYESRIPLLQSIAATYAASPFVHKVLILWGNPSTSTKTLKKLAQNLTAGPIALIRQSSNSLNSRFLPRKSIQTGAVLICDDDVEIDTSSLEFAFRIWGRNRERLVGFFVRSHDLDLSRREWIYTVHQDKYSIVLTKLMILKTEYLFEYNCGGGAAMADMRRVVDRERNCEDILMNFVVADMSNAGPILVAAQRIRDWGDPRNEDDGNGRLGLSEVGLSNRKGEHRKRRGRCITEFHKRFGRMPLRYSYGKLVNSVGEQGLCRKGGKLVLCDQNVL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42724008 42730289 + Maker00016481 Lcy9g1752 642868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1752 611 Pfam Auxin responsive protein 14 128 IPR003676 GO:0009733(InterPro)
Lcy9g1752 611 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 326 593 IPR029044 -
Lcy9g1752 611 MobiDBLite consensus disorder prediction 158 177 - -
Lcy9g1752 611 PANTHER GLYCOSYLTRANSFERASE FAMILY PROTEIN 64 C3 304 608 IPR053349 -
Lcy9g1752 611 SUPERFAMILY Nucleotide-diphospho-sugar transferases 330 586 IPR029044 -
Lcy9g1752 611 FunFam Glycosyltransferase family protein 47 326 594 - -
Lcy9g1752 611 Pfam Glycosyl transferase family 64 domain 330 589 IPR015338 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2081 Lcy-Chr11:44362022 Lcy9g1752 Lcy-Chr9:42724008 5.27E-21 dispersed
Lcy3g2326 Lcy-Chr3:50133264 Lcy9g1752 Lcy-Chr9:42724008 2.27E-41 dispersed
Lcy5g1943 Lcy-Chr5:42243728 Lcy9g1752 Lcy-Chr9:42724008 4.85E-12 dispersed
Lcy5g2101 Lcy-Chr5:44091897 Lcy9g1752 Lcy-Chr9:42724008 2.62E-13 dispersed
Lcy7g0973 Lcy-Chr7:10024063 Lcy9g1752 Lcy-Chr9:42724008 1.26E-26 dispersed
Lcy7g2011 Lcy-Chr7:47215620 Lcy9g1752 Lcy-Chr9:42724008 2.97E-21 dispersed
Lcy9g0155 Lcy-Chr9:3413082 Lcy9g1752 Lcy-Chr9:42724008 9.24E-49 dispersed
Lcy9g1752 Lcy-Chr9:42724008 Lcy9g2251 Lcy-Chr9:47027801 1.22E-17 dispersed
Lcy9g1752 Lcy-Chr9:42724008 Lcy8g1182 Lcy-Chr8:38272764 1.63E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1752 - - - 0.0