Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1759 ATGAGGATTTTATGGAGCAGATTCAAGGCAACTGATGTTCCTGCCAGTGTAGTAAAAGGAGCACCAGATTTTTGCAATGTGTTTGTCATTTCTAAAGGGAAAATCCAATCAATGCGTTCGGCATCTCGTCCTGCTCCCGTCGCGAATGCTCTACGAGGTCAATTAGCGCAACAAGCCAGCGCAAAATCCGATACACCCGACTACCACGTCCCTCACTCTGCAAGTGCAAGAGATTCGGACATATCGTATGTTAGCTCGGGAAGGCCGAGTATCGATCGAATATTTCCTTCACCTTATGAGAACCAAGAAATGGGAGGAAGAGCCACCCCACCACAGATGTCAAGCAGTACAGATATTGACTTGACACGCAGCTTCGAGTCTCTGCAGCTCGGACGGATGTCTGTCGATATGAGCTTCCCTTCCGAGTTCTCTTCCATCTCGCAAGACAGTGGTGACAGATTGTCAATTTCATCACAGTCTATGGAAGACGTAGAGGCCGAGATGCGGAGGCTGAAGCTAGAACTGAAGCAAACCATGGAAATGTATAGTACAGCTTGCAAGGAAGCACTTACAGCAAAACAAAAGGCGGTAGAGCTACAAAGGTGGAAATTAGAAGAAGAAAGGAGATTAGAGGAGGCGAGATTGGCAGGGGAAGCAGCATTGGCGCTAGCGGAACAGGAGAAGGCAAAGTCGAAAGCGGCGATTGAGGCAGCGGAAGCAGCAAGGAGGATAGCAGAACTGGAAGCACAGAAAAGAATGAAGGCTGAAATGAAAGCACTCAAAGAAGCTGAGGAGAAGAAAAAGGCAGTTGATGCATTGGCTCAAACCGATATAAGGTATAGAAGGTATACGATCGAGGAGATCGAAGAGGCAACCGAGTTCTTTTCGGAAGCTCGCAGGATCGGAGAAGGAGGCTATGGTCCTGTATACAAGTGTGATCTTGATCATACTCCTGTTGCCATTAAGGTTCTACGTCCCGACGCGACTCAAGGACGATCGCAGTTTAAACAAGAGGTAGAAGTACTAAGTTGTATACGGCATCCGAACATGGTTCTCCTCCTCGGAGCTTGCCCCGAGTATGGCTGCTTGGTGTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGACTTCTCCGACGAGGAAACACGCCTCCACTTTCGTGGCAAATAAGGTTTAAAATTGCAGCTGAAATTGGAACTGCATTGTTGTTCCTACACCAAACAAAGCCAGAGCCTCTAGTGCACCGCGATCTCAAACCGGCTAACATTCTGCTTGACCGTAACTTTGTCAGCAAGATCAGCGATGTGGGCTTGGCTAGGCTTGTACCTCCATCGGTTGCCGATAGCGTAACACAATATCGAATGACATCGACTGCTGGAACGTTTTGCTACATTGATCCAGAGTATCAGCAGACAGGTATGCTTGGTGTCAAATCCGACATATACTCACTAGGCATCATGTTTCTCCAACTGATAACCTCCAGGCCACCAATGGGATTGACTCACCACGTCGAAAGAGCTATCGAGAAGGGCACGTTCGCAAGTATTCTCGATCCAGCCGTCCCCGATTGGCCTATCGAAGAAGCTTTGTCTTTCGCCAAGTTGTCGCTCAAGTGTGCCGAGTTAAGACGTAAAGATAGGCCTGATCTTGGGAAGGCCATCCTGCCAGAGCTCAACAGGTTGAGAACTATTGCAGAAGACACAATGCACCCCACAATGATGGGAGACATAAGCCCCTCTCGCAGCAGCAGCCAAGTTTCTCTACAGTTGGGAGCAATGGCTTCATCCCCGCAATCATACAACAGCTCGAAAAATCCATCTGCTACTCTTTGA 1833 48.39 MRILWSRFKATDVPASVVKGAPDFCNVFVISKGKIQSMRSASRPAPVANALRGQLAQQASAKSDTPDYHVPHSASARDSDISYVSSGRPSIDRIFPSPYENQEMGGRATPPQMSSSTDIDLTRSFESLQLGRMSVDMSFPSEFSSISQDSGDRLSISSQSMEDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEERRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRMKAEMKALKEAEEKKKAVDALAQTDIRYRRYTIEEIEEATEFFSEARRIGEGGYGPVYKCDLDHTPVAIKVLRPDATQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLLRRGNTPPLSWQIRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSRPPMGLTHHVERAIEKGTFASILDPAVPDWPIEEALSFAKLSLKCAELRRKDRPDLGKAILPELNRLRTIAEDTMHPTMMGDISPSRSSSQVSLQLGAMASSPQSYNSSKNPSATL 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42784375 42787943 + Maker00016877 Lcy9g1759 642875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1759 610 PANTHER OS02G0152300 PROTEIN 8 603 IPR051348 -
Lcy9g1759 610 SUPERFAMILY Protein kinase-like (PK-like) 277 552 IPR011009 -
Lcy9g1759 610 Coils Coil 221 273 - -
Lcy9g1759 610 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 267 367 - -
Lcy9g1759 610 MobiDBLite consensus disorder prediction 575 610 - -
Lcy9g1759 610 MobiDBLite consensus disorder prediction 571 610 - -
Lcy9g1759 610 Coils Coil 154 181 - -
Lcy9g1759 610 SMART serkin_6 295 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1759 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1759 610 Gene3D Transferase(Phosphotransferase) domain 1 368 575 - -
Lcy9g1759 610 Gene3D Phosphorylase Kinase; domain 1 272 367 - -
Lcy9g1759 610 ProSiteProfiles Protein kinase domain profile. 295 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1759 610 Pfam Protein kinase domain 296 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1759 610 Coils Coil 187 207 - -
Lcy9g1759 610 MobiDBLite consensus disorder prediction 55 84 - -
Lcy9g1759 610 FunFam U-box domain-containing protein 51 368 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2227 Lcy-Chr3:49084957 Lcy9g1759 Lcy-Chr9:42784375 2.83E-194 dispersed
Lcy4g1566 Lcy-Chr4:39577499 Lcy9g1759 Lcy-Chr9:42784375 1.13E-228 dispersed
Lcy4g2245 Lcy-Chr4:49020170 Lcy9g1759 Lcy-Chr9:42784375 5.83E-133 dispersed
Lcy8g1810 Lcy-Chr8:44496558 Lcy9g1759 Lcy-Chr9:42784375 6.31E-72 dispersed
Lcy9g1759 Lcy-Chr9:42784375 Lcy9g1023 Lcy-Chr9:33684062 2.09E-52 dispersed
Lcy9g1759 Lcy-Chr9:42784375 Lcy13g1359 Lcy-Chr13:31660266 2.11E-288 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66215 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1759 - - - 0.0