Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1762 ATGGCGCCGAGATTGGGGTTTTTGAGTTGGTGGGGAAAAGAGAAAGACACTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAACTTCTCCGTCGTCGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAGCAAGTCACGTGGGTTCTTCTTCTTAAGGCCAATCGAGCTGTCGGTTGCATAACTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACGATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGAAAGTTGGGGAGAGGGAAGTTACTCTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATGGCGATTCTTGCTTTTGAGATACTTGCCTACTTCAAAGGCTGGCATTATTTTCAGAATCCCAATCTGCACATTCCTCAGGCTTCTGATTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAACCAAAGATTGAAGGGGATCCCTTCAGGTTGGATGATGTGGAGGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATCTCGGCTGTCTGTCAGATCGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTTGCTAAATGGAGCCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGACGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAGTCCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTTAACAAGGACGAAAACTTGTTGACACGTCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTCGGTTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTTGAGGAGTCCGGAGGATGGCTTGAAAGAACAACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAACAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATATCAGCATGGAAAAAGGCAAATTTGATACTGCTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTTTATTCCTTCACGTTGTTCTGTATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTAATCTGCTATGTGCCCGTCTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATCGTCCCCTACCTTCTTTTTGAAAACACTATGTCCGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTGGGAAGCTCTTATGAATGGATTGTGACTAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTTGCTGCTGCTGAAAGAGACTCTAAGATAATGAATCAAGCTCAGATCTATAGAGGCGCTTCCGAGAGTGAGCTCTCTGAGTTGAGCCACTTAAAGGAACGCAAAGAAATCGTCACTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTGGCGCTCGCATTTCTTTTACTTTTGGCTTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCATTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2088 43.44 MAPRLGFLSWWGKEKDTQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSMAILAFEILAYFKGWHYFQNPNLHIPQASDLQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIIYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKIMNQAQIYRGASESELSELSHLKERKEIVTAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42822519 42827410 + Maker00016442 Lcy9g1762 642878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1762 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 449 IPR029044 -
Lcy9g1762 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lcy9g1762 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Lcy9g1762 695 Pfam Glycosyl transferase family group 2 324 534 IPR001173 -
Lcy9g1762 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 530 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g1762 Lcy-Chr9:42822519 0 dispersed
Lcy13g2156 Lcy-Chr13:40481904 Lcy9g1762 Lcy-Chr9:42822519 1.03e-315 dispersed
Lcy1g1280 Lcy-Chr1:12160729 Lcy9g1762 Lcy-Chr9:42822519 1.44E-136 dispersed
Lcy3g1330 Lcy-Chr3:39597228 Lcy9g1762 Lcy-Chr9:42822519 6.99E-142 dispersed
Lcy3g1331 Lcy-Chr3:39607694 Lcy9g1762 Lcy-Chr9:42822519 6.16E-42 dispersed
Lcy9g1762 Lcy-Chr9:42822519 Lcy9g2003 Lcy-Chr9:44915253 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1762 - - - 0.0