Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1762 ATGGCGCCGAGATTGGGGTTTTTGAGTTGGTGGGGAAAAGAGAAAGACACTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAACTTCTCCGTCGTCGAGATCGACGGTCCCGACGCCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAGCAAGTCACGTGGGTTCTTCTTCTTAAGGCCAATCGAGCTGTCGGTTGCATAACTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACGATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGAAAGTTGGGGAGAGGGAAGTTACTCTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATGGCGATTCTTGCTTTTGAGATACTTGCCTACTTCAAAGGCTGGCATTATTTTCAGAATCCCAATCTGCACATTCCTCAGGCTTCTGATTTGCAAGGATTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATAAAGTACAAAAGAATTGAACCAAAGATTGAAGGGGATCCCTTCAGGTTGGATGATGTGGAGGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATCTCGGCTGTCTGTCAGATCGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTTGCTAAATGGAGCCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGACGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAGTCCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTTAACAAGGACGAAAACTTGTTGACACGTCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTCGGTTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTTGAGGAGTCCGGAGGATGGCTTGAAAGAACAACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAACAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATATCAGCATGGAAAAAGGCAAATTTGATACTGCTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTTTATTCCTTCACGTTGTTCTGTATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTAATCTGCTATGTGCCCGTCTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATCGTCCCCTACCTTCTTTTTGAAAACACTATGTCCGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTGGGAAGCTCTTATGAATGGATTGTGACTAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTTGCTGCTGCTGAAAGAGACTCTAAGATAATGAATCAAGCTCAGATCTATAGAGGCGCTTCCGAGAGTGAGCTCTCTGAGTTGAGCCACTTAAAGGAACGCAAAGAAATCGTCACTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTGGCGCTCGCATTTCTTTTACTTTTGGCTTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCATTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2088 43.44 MAPRLGFLSWWGKEKDTQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSMAILAFEILAYFKGWHYFQNPNLHIPQASDLQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIIYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKIMNQAQIYRGASESELSELSHLKERKEIVTAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42822519 42827410 + Maker00016442 Lcy9g1762 642878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1762 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 449 IPR029044 -
Lcy9g1762 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lcy9g1762 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Lcy9g1762 695 Pfam Glycosyl transferase family group 2 324 534 IPR001173 -
Lcy9g1762 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 530 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1762 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1947 Lcy-Chr10:43518590 Lcy9g1762 Lcy-Chr9:42822519 0 dispersed
Lcy13g2156 Lcy-Chr13:40481904 Lcy9g1762 Lcy-Chr9:42822519 1.03e-315 dispersed
Lcy1g1280 Lcy-Chr1:12160729 Lcy9g1762 Lcy-Chr9:42822519 1.44E-136 dispersed
Lcy3g1330 Lcy-Chr3:39597228 Lcy9g1762 Lcy-Chr9:42822519 6.99E-142 dispersed
Lcy3g1331 Lcy-Chr3:39607694 Lcy9g1762 Lcy-Chr9:42822519 6.16E-42 dispersed
Lcy9g1762 Lcy-Chr9:42822519 Lcy9g2003 Lcy-Chr9:44915253 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy8g1070 . 272 432 REM Transcription Factor Family AT1G49480 72.0 1.2e-56 217.2
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy9g1762 . 1 696 REM Transcription Factor Family AT2G24630 78.5 0.0e+00 1103.2
Lcy10g1947 . 6 670 REM Transcription Factor Family AT2G24630 69.3 4.8e-266 914.4
Lcy9g2003 . 1 707 REM Transcription Factor Family AT2G24630 64.3 3.8e-263 904.8
Lcy13g2156 . 5 699 REM Transcription Factor Family AT2G24630 65.8 8.8e-260 893.6
Lcy3g1330 . 108 347 REM Transcription Factor Family AT2G24630 80.8 1.6e-115 414.5
Lcy10g1696 . 13 334 REM Transcription Factor Family AT2G24630 51.2 2.5e-89 327.4
Lcy8g1070 . 272 432 REM Transcription Factor Family AT1G49480 72.0 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38