Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1763 ATGGAGTTGAAGAAAGGGAAGTTCGTGAGGTTTTACTCCAATGAGAAGCAGAATCTCGAGCTTCCATGGGAGAAAACCGATGCTAAGAGGCGCATTGAGTTTCCATTACCAGTTTTCAAAATGGGTACTGCTCCATTATCGAAATTAGACATTGGGGTTGGGGATAAAAGTAAAATTAGCTCAGATTTAGGGAGGTCGAAGATTTTTGTGGAGAATAATGGGGCACAACAGACGAGGATTCTTAACCCTGAAAGTGAAACGATTCTGAGATGGAACAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCTCTTTTCTTCTACCTTCCTTCTGTGATTCACCATGGCAGGTCTTCTTGTATGACTACTGATTTCAATTTAGGAATTGTTGTGACTGTTTTTCGCACTTTTGCCGATGTGTTCTATCTGTTGCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCACCCACTTCAAGAGTTTTTGGCAAAGGTGAACTAGTCACTGATCCAAAAAAGATTGCTAAACGTTACTTGAAGTCTGATTTCTTTATAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATAATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTTTGGTGTTAGTAGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATCTTCCCATTGAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCAGGGGCTGCATATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGAGAATTCAGTCCTATGAAATGCCTTCTTGACTATCTGGATTGTGGTACTTTAGATTATGTAGACCGCAGGATATGGGAAGTAAATACTACTGTGTTTAGCCAATGTTCTCCGGACGAAGATGTCGTTTTCAATTACGGGATATTTGCCGATGCGATCACGAAAAACGTCATCTCCTCCGGGTTCGTTCAGAAGTATTTCTACTGTCTATGGTGGGGATTACAGAACTTGAGTTCCTATGGTCAGGGTTTGGAGACAACTACCTTCATAGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCCTGTTTGCGCATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAGTGGAGGGTCAAGCGTCGAGACACTGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTCGACGAAGAGTCGATCTTACAAGGTCTTCCAACAGATCTTCGTCGAGATATTCAGCGTCATCTATGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCTCAGATGGATGATCAACTACTTGACGCGATCTGCGAGCGATTGGCGTCGTCCTTATGTACACAAGGTACTTACATTGTTCGTGAGGGAGATCCTGTTACCGAGATGCTCTTTATCATCCGAGGGATGCTTGAGAGTTCAACAACAGATGGAGGACGGTCGGGTTTCTTCAATTCGATAACCTTAAGACCGGGAGATTTTTGTGGGGAAGAGCTTCTCGCTTGGGCATTGCTTCCAAAATCTTCAATCAGCTTGCCATCTTCTACTAGAACAGTTAGAGCAATCACTGAAGTCGAAGCCTTTGCTCTGCGAGCAGAGGATCTCAAATTCGTCGCTAATCAGTTTCGACGTCTCCATAGCAAGAAGCTTCAACACACCTTCCGGTTTTACTCTTATCATTGGAGAACCTGGGCAGCTTGCTTCATTCAAGCAGCATGGCGTCGCTTCAAAAGGAGAATCATAGCAAAGTCGCTCAGTATGCAGGAGTCTTTCTCACTGACTCCTGAGAAGCCAGCGGCTGAAGAAGCCGAACAAGAAGAGGAAGAACATAACACTCCGCGCTCCAATTACTCTCAAGCAAAACAAAACCTTGGTGTCACGATATTGGCTTCAAGGTTTGCTGCAAACACACGTCGAGGAGCACAGAAGCTTAAGGATGTCAACTTATCGAAGCTTCGAAAGCCTGATGAGCCAGACTTTTCAGAAGAACCAGATGATTAA 2190 43.65 MELKKGKFVRFYSNEKQNLELPWEKTDAKRRIEFPLPVFKMGTAPLSKLDIGVGDKSKISSDLGRSKIFVENNGAQQTRILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHGRSSCMTTDFNLGIVVTVFRTFADVFYLLHMVLKFRMAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFFIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLVVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCLLDYLDCGTLDYVDRRIWEVNTTVFSQCSPDEDVVFNYGIFADAITKNVISSGFVQKYFYCLWWGLQNLSSYGQGLETTTFIGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSMQESFSLTPEKPAAEEAEQEEEEHNTPRSNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42827391 42831769 - Maker00016493 Lcy9g1763 642879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1763 729 ProSiteProfiles cAMP/cGMP binding motif profile. 489 619 IPR000595 -
Lcy9g1763 729 SMART cnmp_10 489 620 IPR000595 -
Lcy9g1763 729 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Lcy9g1763 729 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Lcy9g1763 729 Pfam Ion transport protein 91 416 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy9g1763 729 Gene3D Jelly Rolls 487 607 IPR014710 -
Lcy9g1763 729 MobiDBLite consensus disorder prediction 707 729 - -
Lcy9g1763 729 SUPERFAMILY cAMP-binding domain-like 419 611 IPR018490 -
Lcy9g1763 729 Gene3D - 108 415 - -
Lcy9g1763 729 Gene3D Helix hairpin bin 417 480 - -
Lcy9g1763 729 CDD CAP_ED 489 620 IPR000595 -
Lcy9g1763 729 MobiDBLite consensus disorder prediction 707 722 - -
Lcy9g1763 729 SUPERFAMILY Voltage-gated potassium channels 87 411 - -
Lcy9g1763 729 Pfam Cyclic nucleotide-binding domain 512 601 IPR000595 -
Lcy9g1763 729 MobiDBLite consensus disorder prediction 655 683 - -
Lcy9g1763 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1365 Lcy-Chr1:13200281 Lcy9g1763 Lcy-Chr9:42827391 7.56E-226 dispersed
Lcy2g0228 Lcy-Chr2:1801172 Lcy9g1763 Lcy-Chr9:42827391 0 dispersed
Lcy2g0647 Lcy-Chr2:5522638 Lcy9g1763 Lcy-Chr9:42827391 4.19E-276 dispersed
Lcy4g1737 Lcy-Chr4:43240603 Lcy9g1763 Lcy-Chr9:42827391 7.96E-55 dispersed
Lcy4g1738 Lcy-Chr4:43247421 Lcy9g1763 Lcy-Chr9:42827391 3.60E-127 dispersed
Lcy5g2590 Lcy-Chr5:48533587 Lcy9g1763 Lcy-Chr9:42827391 7.50E-78 dispersed
Lcy6g1250 Lcy-Chr6:15082756 Lcy9g1763 Lcy-Chr9:42827391 2.07E-116 dispersed
Lcy8g1911 Lcy-Chr8:45376747 Lcy9g1763 Lcy-Chr9:42827391 1.32E-256 dispersed
Lcy9g1763 Lcy-Chr9:42827391 Lcy10g0256 Lcy-Chr10:4165205 1.10E-272 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1763 K05391 - csv:101211072 1240.33